View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_47 (Length: 284)
Name: NF5876_high_47
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 2337424 - 2337159
Alignment:
| Q |
17 |
acgtacatagtcatccacactgttagttggtgatctatatgtatat--------tagtatacgaagagcaacgatgcacttcttcaagtcatgttctacc |
108 |
Q |
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| T |
2337424 |
acgtacatagtcatccacactgttagttggtgatctatatatatatatatatgttagtatactaagagcaacgatgcacttcttcaagtcatgttctacc |
2337325 |
T |
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| Q |
109 |
cactatatcattcgttctctgaaagtactcatcatgattaccaagggcttcaacaatgtgaagggacacatgtcttcacatacagaacctttgtcaaaat |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
2337324 |
cactatatcattcgttttctgaaagtactcatcatgattaccaagggcttcaacgatgtgaaggaacacatgtcttcacatacataacctttgtcaaaat |
2337225 |
T |
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| Q |
209 |
tgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcgattatacccttcttc |
274 |
Q |
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| T |
2337224 |
tgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcggttatgcccttcttc |
2337159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 102 - 274
Target Start/End: Original strand, 29264827 - 29264998
Alignment:
| Q |
102 |
ttctacccactatatcattcgttctctgaaagtactcatcatgattaccaagggcttcaacaatgtgaagggacacatgtcttcacatacagaacctttg |
201 |
Q |
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| T |
29264827 |
ttctacccactgcaccaatccttctttgaaagtactcatcatgattaccaagggcttcatcgatgcgaaggaacacatgtcttcgcatacggaaccttcg |
29264926 |
T |
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| Q |
202 |
tcaaaattgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcgattatacccttcttc |
274 |
Q |
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| T |
29264927 |
tcgaaattgagcctctgtgtatacaggattttcagagaagtagtca-ttaaacaattggttatgcccttcttc |
29264998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 26676010 - 26676109
Alignment:
| Q |
174 |
acacatgtcttcacatacagaacctttgtcaaaattgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcgattatacccttctt |
273 |
Q |
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| T |
26676010 |
acacatgtctttgcattcggaacctttgtcgaaattgagcttgtgtgtatactggattttcagagaaatactca-ttaaacaatcgattattcccttctt |
26676108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 19731293 - 19731352
Alignment:
| Q |
191 |
cagaacctttgtcaaaattgagcctccgtgtatacaggattttcagagaagtagtcattt |
250 |
Q |
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| T |
19731293 |
cagaaccttcgtccaaattgagcatctgtgtatactggattttcatagaagtagtcattt |
19731352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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