View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_5 (Length: 620)
Name: NF5876_high_5
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 62 - 607
Target Start/End: Original strand, 3037850 - 3038392
Alignment:
| Q |
62 |
tcccaatctaaattcgaaaaatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaacagcttcatcaaaccgtacaagttc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3037850 |
tcccaatctaaattcgaaaaatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaacagcttcatcaaaccgtacaagttc |
3037949 |
T |
|
| Q |
162 |
ttcagaagtgattttggcacctgcaagaccaaagaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtagg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3037950 |
ttcagaagtgattttggcacctgcaagaccaaagaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtagg |
3038049 |
T |
|
| Q |
262 |
aagaataacaagtgggtttgtgagatgagagttcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaa |
361 |
Q |
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| T |
3038050 |
aagaataacaagtgggtttgtgagatgagagttcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaa |
3038149 |
T |
|
| Q |
362 |
tggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtc |
461 |
Q |
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||||||||||||||||||| |||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038150 |
tggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtc |
3038249 |
T |
|
| Q |
462 |
gaatgatgtgatggagataaggagggcggcgatggaggctgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtg |
561 |
Q |
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| T |
3038250 |
gaatgatgcgacggagataaggagggcggcgatggaggctgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtg |
3038346 |
T |
|
| Q |
562 |
tttatggacatggaagattccaagaatatgctagaagcacaggttc |
607 |
Q |
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| T |
3038347 |
tttatggacatggaagattccaagaatatgctagaagcacaggttc |
3038392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 190 - 607
Target Start/End: Original strand, 3021109 - 3021523
Alignment:
| Q |
190 |
ccaaagaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatga |
289 |
Q |
| |
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| T |
3021109 |
ccaaagaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatga |
3021208 |
T |
|
| Q |
290 |
gagttcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgc |
389 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3021209 |
gagttcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgc |
3021308 |
T |
|
| Q |
390 |
acttgctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcg |
489 |
Q |
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|||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
3021309 |
acttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcg |
3021408 |
T |
|
| Q |
490 |
gcgatggaggctgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaata |
589 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021409 |
gcgatggaggctgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaata |
3021505 |
T |
|
| Q |
590 |
tgctagaagcacaggttc |
607 |
Q |
| |
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|||||||||||||||||| |
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| T |
3021506 |
tgctagaagcacaggttc |
3021523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 154 - 504
Target Start/End: Original strand, 3030287 - 3030637
Alignment:
| Q |
154 |
acaagttcttcagaagtgattttggcacctgcaagaccaaagaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtac |
253 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
3030287 |
acaagttcttcagaagtgattttggcatctgcaagaccaaagaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtac |
3030386 |
T |
|
| Q |
254 |
gacgtaggaagaataacaagtgggtttgtgagatgagagttcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaac |
353 |
Q |
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|| | ||||| |||||||||||||||||||||||||||||||| || | || |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3030387 |
gaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaac |
3030486 |
T |
|
| Q |
354 |
tcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttg |
453 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
3030487 |
tcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttg |
3030586 |
T |
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| Q |
454 |
ccggagtcgaatgatgtgatggagataaggagggcggcgatggaggctgct |
504 |
Q |
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|||||||| ||||||| | ||||||||||||| || ||||||||||||||| |
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| T |
3030587 |
ccggagtcaaatgatgcggtggagataaggagagctgcgatggaggctgct |
3030637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 3021015 - 3021072
Alignment:
| Q |
81 |
aatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaaca |
138 |
Q |
| |
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||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| |
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| T |
3021015 |
aatggatttcttcatgtcatcttttggtgagtactcagacacttcttcttcagaaaca |
3021072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 328 - 446
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
328 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttg |
427 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||| || |||||||| ||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
|
| Q |
428 |
ctgactctgcatggcggtt |
446 |
Q |
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|||||||||| |||||||| |
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| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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