View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_50 (Length: 270)
Name: NF5876_high_50
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 52547241 - 52546982
Alignment:
| Q |
1 |
tgaagcattatatgtgtatcattcatttttatatgtgatttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcaga |
100 |
Q |
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| T |
52547241 |
tgaagcattatatgtgtatcattcatttttatatgtgatttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcaga |
52547142 |
T |
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| Q |
101 |
ttggtctcaagggtgaaaccttaaaacttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctttgac |
200 |
Q |
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| T |
52547141 |
ttggtctcaagggtgaaaccttaaaacttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctttgac |
52547042 |
T |
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| Q |
201 |
atggtacaaggtatgattaaattttcaacatatgttttatttctgtcacatggatctgtg |
260 |
Q |
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| T |
52547041 |
atggtacaaggtatgattaaattttcaacatatgttttatttctgtcacatgaatctgtg |
52546982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 5232740 - 5232788
Alignment:
| Q |
165 |
acaaggaccatcattggctaaaagacaacctttgacatggtacaaggta |
213 |
Q |
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| T |
5232740 |
acaaggatcatcattggctaaaaaacaacctttgacatggtacaaggta |
5232788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 17128594 - 17128727
Alignment:
| Q |
97 |
cagattggtctcaagggtgaaaccttaaaacttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctt |
196 |
Q |
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| T |
17128594 |
cagattggactgaaaggtgaatccttaaaccttcataccacaagtggaagttcttctgttaaatggacacaaggatcatttttatctaaaaaacaacctt |
17128693 |
T |
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| Q |
197 |
tgacatggtacaaggtatgattaaattttcaaca |
230 |
Q |
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| T |
17128694 |
tgacatggtacaaggtaagaatgagttttcaaca |
17128727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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