View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_high_53 (Length: 264)
Name: NF5876_high_53
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_53 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 21613816 - 21613553
Alignment:
| Q |
1 |
accttaacttgttcctcaattgcttgctatgcaaccttctaaactgagatgcaacaaacttcaagtcttctgctataagtgcaaaggcttctacttcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21613816 |
accttaacttgttcctcaattgcttgctatgcaaccttctaaactgagatgcaacaaacttcaagtcttctgctataagtgcaaaggcttctacttcaga |
21613717 |
T |
|
| Q |
101 |
tatggctttaaccgttcgagtcgaagaaggaattaccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcaccgcaaaaatcacctgggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
21613716 |
tatggctttaaccgttcgagtcgaagaaggaattaccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcgccacaaaaatcacctgggcca |
21613617 |
T |
|
| Q |
201 |
atacgacatgagttgaagaaaccagtgcggcctccatccgttgtgtatgaaacaaattttcctc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
21613616 |
atacgacatgagttgaagaaaccagtgcggcctccatccgttgtgtaggaatcaagatttcctc |
21613553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 40510543 - 40510727
Alignment:
| Q |
36 |
cttctaaactgagatgcaacaaacttcaagtcttctgctataagtgcaaaggcttctacttcagatatggctttaaccgttcgagtcgaagaaggaatta |
135 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||| ||||| |||||||| ||||||||||| || | |||||||| |||| || || ||||| | || |
|
|
| T |
40510543 |
cttctaaattgagatgcaacaaacttaagatcttcagctatgagtgcaaaagcttctacttctgagaaagctttaactgttcttgttgaggaagggagta |
40510642 |
T |
|
| Q |
136 |
ccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcaccgcaaaaatcacctgggccaatacgacatgagttgaagaa |
220 |
Q |
| |
|
|| | | |||| |||||| || |||||||| || ||||| ||||| || ||||| ||||| || || | ||||||||||||||| |
|
|
| T |
40510643 |
tcacacttggtcttggatctaaggcccatgttaagagctcttcaccacagaaatcgcctggaccgattctacatgagttgaagaa |
40510727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University