View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_56 (Length: 253)
Name: NF5876_high_56
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 27953 - 28205
Alignment:
| Q |
1 |
ttcactaatcactagtctgatgtttgtgttggtccacgatgtcatatatgctaaaccagaatttcagaagctacaccagccgattcactcaacacgttga |
100 |
Q |
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| T |
27953 |
ttcactaatcactagtctgatgtttgtgttggtccacgatgtcatatatgctaaaccagaatttcagaagctacaccagccgattcactcaacacgttga |
28052 |
T |
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| Q |
101 |
aggatgtcatattatttacgaaagaaaagtagaatttaggtatcattccaactcaaactaagaagtaagaacaaattttgaagtgattttgtgatacact |
200 |
Q |
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| T |
28053 |
aggatgtcatattatttacgaaagaaaagtagaatttaggtatcattccaactcaaactaagaagtaagaacaaattttgaagtgattttgtgatacact |
28152 |
T |
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| Q |
201 |
ttaggctgttttatgttggcattctaaacacatctaataatgaggtcttgaca |
253 |
Q |
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| T |
28153 |
ttaggctgttttatgttggcattctaaacacctctaataatggggtcttgaca |
28205 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 21352934 - 21352983
Alignment:
| Q |
161 |
agaagtaagaacaaattttgaagtgattttgtgatacactttaggctgtt |
210 |
Q |
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| T |
21352934 |
agaagtaagaacatattttgaagtgattttgcgattccctctaggctgtt |
21352983 |
T |
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