View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_57 (Length: 252)
Name: NF5876_high_57
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_57 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 1886177 - 1886019
Alignment:
| Q |
19 |
ttctagagttaagatcattggcttagaatggcactattttgggataaatatataaggggcatttcaaatttttcatcataatataggatagtttagacaa |
118 |
Q |
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| T |
1886177 |
ttctagagttaagatcattggcttagaatgacactattttgggataaatatataaggggcatttcaaatttttcatcataatataggataggttagacaa |
1886078 |
T |
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| Q |
119 |
taatataatgagtagtagtaatttatctttgttccactacttgctcttttgtcatgtta |
177 |
Q |
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| T |
1886077 |
taatataatgagtagtagtaatttatctttgttccactacttgctcttttgtcatgtta |
1886019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 1876486 - 1876332
Alignment:
| Q |
19 |
ttctagagttaagatcattggcttagaatggcactattttgggataaatatataaggggcatttcaaatttttcatcataatataggatagtttagacaa |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1876486 |
ttctagagttaagatcattggcttagaatgacactattttgggataaatatataaggggcatttcaaatttttcatcataatataggataggttagacaa |
1876387 |
T |
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| Q |
119 |
taatataatgagtagtagtaatttatctttgttccactacttgctcttttgtcat |
173 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1876386 |
taatataataagtagtagtaatttatctttgttccacaacttgctcttttgtcat |
1876332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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