View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_7 (Length: 546)
Name: NF5876_high_7
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 5921237 - 5920711
Alignment:
| Q |
18 |
gttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5921237 |
gttaagactcaagttcttcttcttgatcctcttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaacaataattctttaccaatttcag |
5921138 |
T |
|
| Q |
118 |
tctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacct |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5921137 |
tcactgcttcagatgatagtaacatacaattgaatgcttatgaggttaagaaatcacaaggacgtggtaaaggttct--tttgttcattctcaaaaacct |
5921040 |
T |
|
| Q |
218 |
actaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaa |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |
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| T |
5921039 |
actacgtattgcaccttttgtcacaagactaatcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaa |
5920940 |
T |
|
| Q |
318 |
atgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5920939 |
atgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctccagagcaatatac |
5920840 |
T |
|
| Q |
418 |
tcaacttgtttcc-ttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttt |
516 |
Q |
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| T |
5920839 |
tcaacttgtttcctttgctacaacaggcaagtttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaagtcactccttt |
5920740 |
T |
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| Q |
517 |
tgtttctattagcatctctgctcctcctc |
545 |
Q |
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| T |
5920739 |
tgtttctactagcatctctgctactcctc |
5920711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
396 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
453 |
Q |
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|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
227 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
282 |
Q |
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||||| |||| | |||||| |||||| || |||||||||||||||||||||||||| |
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| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 6340979 - 6341059
Alignment:
| Q |
21 |
aagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
101 |
Q |
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|||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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| T |
6340979 |
aagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
6341059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 20325539 - 20325019
Alignment:
| Q |
18 |
gttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcag |
117 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20325539 |
gttaagactcaagttcttcttcttaatcctcttccacctcttaataaagtttattctcttgtggtgcaagaagaaagcaataactctttaccaatttcaa |
20325440 |
T |
|
| Q |
118 |
tctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
20325439 |
tctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcccaaggacgtggtaaaggtt-----ttgttaattctcaaaaacct |
20325345 |
T |
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| Q |
218 |
actaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaa |
317 |
Q |
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| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| | |
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| T |
20325344 |
aataggtactgcactttttgtcacaaaactaatcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtga |
20325245 |
T |
|
| Q |
318 |
atgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatac |
417 |
Q |
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||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20325244 |
ctgc---ttctcatgagatccctgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctccagagcaatatac |
20325148 |
T |
|
| Q |
418 |
tcaacttgtttccttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactcctttt |
517 |
Q |
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|||||||||||||||||| || || ||||||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
20325147 |
tcaacttgtttccttgctgcagcaggctagtttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaaaccactcctttt |
20325048 |
T |
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| Q |
518 |
gtttctattagcatctctgctcctcctca |
546 |
Q |
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||||| | || ||| |||||| ||||||| |
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| T |
20325047 |
gtttccaataacatttctgcttctcctca |
20325019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 11923060 - 11923141
Alignment:
| Q |
24 |
actcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt |
105 |
Q |
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||||||||| | |||||||||||| ||||| | || || |||||||||| ||||| || |||||||||||||||| |||| |
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| T |
11923060 |
actcaagttttgcttcttgatcctattccttccctgaacaaggtttacttccttgttgtttaagaagaaagcaataactctt |
11923141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 16992348 - 16992268
Alignment:
| Q |
21 |
aagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
101 |
Q |
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|||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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| T |
16992348 |
aagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
16992268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
233 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
282 |
Q |
| |
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||||||||||||||||||||||| | || ||||| |||||||||||||| |
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| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 20485183 - 20485103
Alignment:
| Q |
21 |
aagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
101 |
Q |
| |
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|||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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|
| T |
20485183 |
aagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
20485103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 28016008 - 28016088
Alignment:
| Q |
21 |
aagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
101 |
Q |
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|||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
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| T |
28016008 |
aagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
28016088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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