View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_71 (Length: 248)
Name: NF5876_high_71
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16883254 - 16883023
Alignment:
| Q |
1 |
acatgattgtttaccaaattcaagagcttccctcccatatctgatcgaagtgaaagtatgagcatatttttatccttccatagagcacgccataagtccg |
100 |
Q |
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| T |
16883254 |
acatgattgtttaccaaattcaagagcttccctcccatatctaatcaaagagaaagtatgagcatatttttatccttccaaagagcacgccataagtccg |
16883155 |
T |
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| Q |
101 |
aataagatataccaattccaaagtagattatcaatatccttactcgtcaagttctattaaatccaagcaaaaataccaagacataagaacttaactactc |
200 |
Q |
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| T |
16883154 |
aataagatataccaattccaaagtagattatcaatatccttactcgtcaagttccattgaatccaagcaaaaagaccaagacataagaacttaactactc |
16883055 |
T |
|
| Q |
201 |
caatgttcttcttttatgacactggaccaaag |
232 |
Q |
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| T |
16883054 |
cagtgttcttcttttatgaccctggaccaaag |
16883023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 42502493 - 42502633
Alignment:
| Q |
43 |
gatcgaagtgaaagtatgagcatatttttatccttccatagagc--acgccataagtccgaataagatataccaattccaaagtagattatcaatatcct |
140 |
Q |
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| T |
42502493 |
gatcgatgagaaaatatgagcatatttatatccttccaaacaacccacaccaaaactctgaagaagataaaccaattccaaggtagattaccaatgtaat |
42502592 |
T |
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| Q |
141 |
tactcgtcaagttctattaaatccaagcaaaaataccaaga |
181 |
Q |
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| T |
42502593 |
tacacgtcaagttccattcaatttaaacaaaaataccaaga |
42502633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 36826473 - 36826427
Alignment:
| Q |
127 |
attatcaatatccttactcgtcaagttctattaaatccaagcaaaaa |
173 |
Q |
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|||| |||| ||||||| |||||||||||||| |||||||||||||| |
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| T |
36826473 |
attaccaatgtccttacacgtcaagttctattcaatccaagcaaaaa |
36826427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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