View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_high_79 (Length: 240)
Name: NF5876_high_79
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_79 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 52547495 - 52547276
Alignment:
| Q |
19 |
gtagaatgttggcgttcactttgagacatggaatgccggggtgttaggcccagtcacactcaagggtctaaacgaggggaccagagacttgtcacaacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547495 |
gtagaatgttggcgttcactttgagacatggaatgccggggtgttaggcccagtcacactcaagggtctaaacgaggggaccagagacttgtcacaacag |
52547396 |
T |
|
| Q |
119 |
aaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaaatgttgttgatacttactt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547395 |
aaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaaatgttgttgatacttact- |
52547297 |
T |
|
| Q |
219 |
gtgtcatcactaagaaaatgtt |
240 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52547296 |
-tgtcatcactaagaaaatgtt |
52547276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 5232423 - 5232540
Alignment:
| Q |
21 |
agaatgttggcgttcactttgagacatggaatgccggggtgttaggcccagtcacactcaagggtctaaacgaggggaccagagacttgtcacaacagaa |
120 |
Q |
| |
|
||||||||||| | |||||||| |||||||||| ||||||||||||||||| | | | ||||||||| | |||||||| ||||||||||| ||||| |
|
|
| T |
5232423 |
agaatgttggcctgcactttgaaacatggaatgttggggtgttaggcccagtaagattgaagggtctagatgaggggacaagagacttgtcttggcagaa |
5232522 |
T |
|
| Q |
121 |
atggtcttacaaggtttg |
138 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5232523 |
atggtcttacaaggtttg |
5232540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 17128355 - 17128472
Alignment:
| Q |
21 |
agaatgttggcgttcactttgagacatggaatgccggggtgttaggcccagtcacactcaagggtctaaacgaggggaccagagacttgtcacaacagaa |
120 |
Q |
| |
|
||||||||||||| |||| ||| | |||||||| || |||||||||||||| || | |||||||||||||||||||| |||| ||||| |||| || |
|
|
| T |
17128355 |
agaatgttggcgtgcactatgaaaaatggaatgttggtgtgttaggcccagtaactttgaagggtctaaacgaggggacacgagatttgtctaaacaaaa |
17128454 |
T |
|
| Q |
121 |
atggtcttacaaggtttg |
138 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17128455 |
atggtcttacaaggtttg |
17128472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University