View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_high_89 (Length: 228)
Name: NF5876_high_89
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_high_89 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8662020 - 8661793
Alignment:
| Q |
1 |
ggtaaaaatttatcgactagtttcaattaataaagtgcaataatggaaaagaaagtgccaaagaattattggtatagggataagggaaaggacaagagag |
100 |
Q |
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| T |
8662020 |
ggtaaaaatttatcgactagtttcaattaataaagtgcaataatggaaaagaaagtgccaaagaattattggtatagggataagggaaaggacaagagag |
8661921 |
T |
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| Q |
101 |
aaagacggttcagtatgctgaaagtataatgaaagatgtaatgtgaaacaaaatactaacctttagcatccctatttatctaataacttggttaagtgct |
200 |
Q |
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| T |
8661920 |
aaagacggttcagtatgctgaaagtataatgaaagatgtaatgtgaaacaaaatactaacctttagcatccctatttatctaataacttggttaagtgct |
8661821 |
T |
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| Q |
201 |
agtactataagcccaagtccattagccc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8661820 |
agtactataagcccaagtccattagccc |
8661793 |
T |
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