View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_1 (Length: 752)
Name: NF5876_low_1
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 226 - 740
Target Start/End: Complemental strand, 17167014 - 17166500
Alignment:
| Q |
226 |
gatgttgattaaatatttatttctcaatatattttttcaatgcacactaattattgattgattctaatgtcttgcaagtgttcgtgtctctaacacactt |
325 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17167014 |
gatgttgattaaatatttatttgtcaatatattttttcaatgctcactaattattgattgattctaatgtcttgcaagtgttcgtgtctctaatacactt |
17166915 |
T |
|
| Q |
326 |
ggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtcccttctccttggaatcattttcatgactgttattttcttatgta |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17166914 |
ggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtcccttctccttggaatcattttcatgactgttattttcttatgca |
17166815 |
T |
|
| Q |
426 |
aagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaatggttatcaacagtat |
525 |
Q |
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| T |
17166814 |
aagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttaccttcttggtatgacaatggttatcaacagtat |
17166715 |
T |
|
| Q |
526 |
ttcacaaaccatatcaggttataatttacttgcttttggattagaaaaagtttaatctaagtttaattgcagttttgacccctttattttattagagtaa |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17166714 |
ttcacaaaccatatcaggttataatttacttgcttttggactagaaaaagtttaatctaagtttaattgcagttttgacccctttattttattagagtaa |
17166615 |
T |
|
| Q |
626 |
agaaaatagtctctcgttttcaaaatcgaactttttggtcatttatataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttg |
725 |
Q |
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| T |
17166614 |
agaaaatagtctctcgttttcaaaatcgaactttttggtcatttatataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttg |
17166515 |
T |
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| Q |
726 |
gcatgctattatatt |
740 |
Q |
| |
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||||||||||||||| |
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| T |
17166514 |
gcatgctattatatt |
17166500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 283 - 581
Target Start/End: Complemental strand, 17149311 - 17149013
Alignment:
| Q |
283 |
ttgattctaatgtcttgcaagtgttcgtgtctctaacacacttggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtcc |
382 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||||| |
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| T |
17149311 |
ttgattctaatgccttgcaagtgttcgtgtctctaatacacttggcatgtcacatccaagagcatccaagtactctttcttggtgacaatgtctcagtct |
17149212 |
T |
|
| Q |
383 |
cttctccttggaatcattttcatgactgttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtg |
482 |
Q |
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|||||| |||||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
17149211 |
cttctcattggaaccattttcatgactgttattttcttgagtaaagaaaagtttgcattcatctttaccaacagtgatgatttgatacatgctgcaagtg |
17149112 |
T |
|
| Q |
483 |
aattagcttatcttcttggtataacaatggttatcaacagtatttcacaaaccatatcaggttataatttacttgctt-ttggattagaaaaagtttaat |
581 |
Q |
| |
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||||||| || |||||||||||||| ||||||||||||||||| |||||||| || |||||| || | |||||||||| | || ||||||||||||||| |
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| T |
17149111 |
aattagcataccttcttggtataaccatggttatcaacagtatctcacaaactatttcaggtgatta-ttacttgcttggttgactagaaaaagtttaat |
17149013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 282 - 544
Target Start/End: Complemental strand, 17135531 - 17135269
Alignment:
| Q |
282 |
attgattctaatgtcttgcaagtgttcgtgtctctaacacacttggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtc |
381 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
17135531 |
attgattctaatgtcttgcaagtgttcgtgtctctcatacacttggaatgtcgcatccaagagcatccaaatactctttcttggtagcaatgtctcagtc |
17135432 |
T |
|
| Q |
382 |
ccttctccttggaatcattttcatgactgttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagt |
481 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| | ||| || |||||||| |||||||||||| |||| ||||| ||||||||||| ||| |
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| T |
17135431 |
tcttctcattggaatcattttcatgactgttattttcttgagcaaacaagaatttgccaccatctttaccaaaagtgtggatatgatacatgctgctagt |
17135332 |
T |
|
| Q |
482 |
gaattagcttatcttcttggtataacaatggttatcaacagtatttcacaaaccatatcaggt |
544 |
Q |
| |
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|||||||| ||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
17135331 |
gaattagcatattttcttggtataaccatggttctcaacagtatttcacaaactatatcaggt |
17135269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 17167151 - 17167046
Alignment:
| Q |
89 |
ccaaaagtcttggatatttgtactggagagcgagttcacctctccacggcacattccaaaaactcgtattctcaccattccccacttttcaaacttttat |
188 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17167151 |
ccaaaagtcttggatatttgtaccggagagcgagttcacctctccacggcacattccaaaaactcgtattctcaccattccccacttttcaaacttttat |
17167052 |
T |
|
| Q |
189 |
tcagcc |
194 |
Q |
| |
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|||||| |
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| T |
17167051 |
tcagcc |
17167046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17167323 - 17167258
Alignment:
| Q |
20 |
aaacatcctccacttggctccccctaatatcctccaaatcctccaacaactctaccaacatctcat |
85 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17167323 |
aaacatcctccacttggctctccctaatatcctccaaatcctccaacaactctaccaacatctcat |
17167258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 673 - 740
Target Start/End: Complemental strand, 17148823 - 17148756
Alignment:
| Q |
673 |
taggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctattatatt |
740 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
17148823 |
taggtgtggtcattggatgtggatggcaagttatggttggttacataaacttggcatgttattatatt |
17148756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 671 - 736
Target Start/End: Complemental strand, 17134965 - 17134900
Alignment:
| Q |
671 |
tataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctatta |
736 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
17134965 |
tataggtgtggtcattggatgtggatggcaagttatggttggttacataaacttgggatgttatta |
17134900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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