View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_10 (Length: 504)
Name: NF5876_low_10
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 84 - 504
Target Start/End: Complemental strand, 21614233 - 21613813
Alignment:
| Q |
84 |
tttcgaattggattccaaacatgcagtggttagtatttttagtaagagaattgacgatgtatcttagctactaatcttaggaactttcatgttaagttca |
183 |
Q |
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| T |
21614233 |
tttcgaattggattccaaacatgcagtggttagtatttttagaaaaagaattgacgatgtatcttagctactaatcttaggaactttcatgttaagttca |
21614134 |
T |
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| Q |
184 |
ttccgaaacaaacaaatgagattgcaagatccttgctagagtagcgattgatcataaagtttggcaaattgtgttatgactctagtggctgttaaacttt |
283 |
Q |
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| T |
21614133 |
ttccgaaacaaacaaatgagattgcaagatccttgctagagtagcgattgatcataaagtttagcaaattgtgttatgactctagtggctgttaaacttt |
21614034 |
T |
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| Q |
284 |
gagcatgcaattcttaagagttaaaaagcacaatgcattgtttaaatactaggatttaatttacaagtttactcttaaattgcatacacttgagtgaata |
383 |
Q |
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| T |
21614033 |
gagcatgcaattcttaagagttaaaaagcacaatgcattgtttaaatactaggatttaatttacaagtttactcttaaattgcatacacttgagtgaata |
21613934 |
T |
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| Q |
384 |
tgagtcacactcaacatcgactgccatttcaacaactacctttcttttcttgtatcgtacgtctccatgcaacttgtataaaacaagcagcccacgttct |
483 |
Q |
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| T |
21613933 |
tgagtcacactcaacatcgactgccatttcaacaactacctttcttttcttgtatcgtacgtctccatgcaacttgtataaaacaagcagcccacgttct |
21613834 |
T |
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| Q |
484 |
ccattggtgcgagtgaaacct |
504 |
Q |
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| T |
21613833 |
ccattggtgcgagtgaaacct |
21613813 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 492
Target Start/End: Original strand, 40510452 - 40510499
Alignment:
| Q |
445 |
tctccatgcaacttgtataaaacaagcagcccacgttctccattggtg |
492 |
Q |
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| T |
40510452 |
tctccatgcagcttgaataaaacaagcagcccaagttctccattggtg |
40510499 |
T |
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