View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_14 (Length: 448)

Name: NF5876_low_14
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_14
NF5876_low_14
[»] chr7 (7 HSPs)
chr7 (157-436)||(11038435-11038718)
chr7 (255-436)||(11074654-11074831)
chr7 (255-436)||(7849286-7849463)
chr7 (58-160)||(11038073-11038171)
chr7 (259-384)||(11060859-11060982)
chr7 (58-107)||(7109865-7109914)
chr7 (46-97)||(27842603-27842654)
[»] chr2 (2 HSPs)
chr2 (40-105)||(26169914-26169979)
chr2 (55-111)||(10004179-10004235)
[»] chr1 (2 HSPs)
chr1 (44-96)||(17746043-17746095)
chr1 (62-93)||(19201875-19201906)
[»] chr8 (1 HSPs)
chr8 (70-105)||(24355402-24355437)
[»] chr4 (2 HSPs)
chr4 (46-106)||(36313643-36313703)
chr4 (46-106)||(36327852-36327912)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 157 - 436
Target Start/End: Original strand, 11038435 - 11038718
Alignment:
Q  157 atgtataaaaagaatccaaaaccga-------tttcttcaatttataattaaagacgtaacctgagaccatataacgatgctgaaaagcaaccaatgaat 249  Q
    ||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  11038435 atgtataaaaagaatgcaaaaccgaggcaaattttcttcaatttataattaaagacgtaacctgagaccatataacgatgccgagaagcaaccaatgaat 11038534  T
Q  250 ataaataggtcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaactt 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||   || |||||| ||||||||||||||||||||||||||||||||||||||||    
T  11038535 ataaataggtcaaacaagccaaatacatatgaactttaatttttttt---cttaatgataaaatatgattggctctataccacttgttagtaccaaactt 11038631  T
Q  350 gattttaaaacctggaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatatt 436  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11038632 gattttaaaacctgaaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatatt 11038718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 255 - 436
Target Start/End: Complemental strand, 11074831 - 11074654
Alignment:
Q  255 taggtcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattt 354  Q
    |||||||||||||||||||||||||||||| |  |||| |||||||   |||||||||||||||||||||||||||||||||||  || |||||||||||    
T  11074831 taggtcaaacaagccaaatacatatgaactat--ttttgttttctcc--atgatcaaatatgattggctctataccacttgttataacaaaacttgattt 11074736  T
Q  355 taaaacctggaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatatt 436  Q
    ||||| || |||||||||| |||||||||| |  ||||||||| |||| ||||||||||| || |||||| |||||| ||||    
T  11074735 taaaatctagaattaatcatgttaaccatcaggtataacatattaatacgcggaagcatatctcaattcaaaatcgattatt 11074654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 255 - 436
Target Start/End: Complemental strand, 7849463 - 7849286
Alignment:
Q  255 taggtcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattt 354  Q
    |||||||||||||||||||||||||||||| |  |||| |||||||   ||||||||||||||||| |||||||||||||||||  || |||||||||||    
T  7849463 taggtcaaacaagccaaatacatatgaactat--ttttgttttctcc--atgatcaaatatgattgactctataccacttgttataacaaaacttgattt 7849368  T
Q  355 taaaacctggaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatatt 436  Q
    |||||||| |||||||||| |||||||||| |  ||||||||| |||| | ||||||||| || |||||| |||||| ||||    
T  7849367 taaaacctagaattaatcatgttaaccatcagctataacatattaatacgtggaagcatacctcaattcagaatcgattatt 7849286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 11038073 - 11038171
Alignment:
Q  58 cctaactttagatttgttcctttttgagggggttttggcctagtcccctctcccctttattcttccttttgtttttgaatatatgatggcagcaactcaa 157  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||| |||||   |||| | || |||| |||||||||||||||||||||||||||||||||    
T  11038073 cctaacttttgatttgttcattttttagggggttttggcctagccccct---ccctatgttattcc-tttgtttttgaatatatgatggcagcaactcaa 11038168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 11060982 - 11060859
Alignment:
Q  259 tcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattttaaa 358  Q
    |||||||||||| |||||||| |||| |  ||||  ||||||   |||||||||||||||| ||| |||||||| |||||| ||||||||| ||||| ||    
T  11060982 tcaaacaagccagatacatataaactattttttttctttctcc--atgatcaaatatgattcgctttataccacgtgttagaaccaaacttcattttcaa 11060885  T
Q  359 acctggaattaatcacgttaaccatc 384  Q
    |||| |||||||||| ||||| ||||    
T  11060884 acctagaattaatcatgttaatcatc 11060859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 7109865 - 7109914
Alignment:
Q  58 cctaactttagatttgttcctttttgagggggttttggcctagtcccctc 107  Q
    |||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  7109865 cctaactttaaatttgttcctttttgaggggtttttggcctaatcccctc 7109914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 27842603 - 27842654
Alignment:
Q  46 aagttaggttgacctaactttagatttgttcctttttgagggggttttggcc 97  Q
    ||||||||||| ||||||||||| |||||||||| ||||| |||||||||||    
T  27842603 aagttaggttggcctaactttaggtttgttccttcttgagagggttttggcc 27842654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 26169979 - 26169914
Alignment:
Q  40 agagacaagttaggttgacctaactttagatttgttcctttttgagggggttttggcctagtcccc 105  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  26169979 agagataagttaggttggcctaacttcagatttgttcctttttgagggggttttggcctaatcccc 26169914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 10004179 - 10004235
Alignment:
Q  55 tgacctaactttagatttgttcctttttgagggggttttggcctagtcccctctccc 111  Q
    ||||||||||| |||||| ||| ||||| ||||||| |||||||||||||| |||||    
T  10004179 tgacctaacttcagatttattctttttttagggggtattggcctagtcccccctccc 10004235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17746043 - 17746095
Alignment:
Q  44 acaagttaggttgacctaactttagatttgttcctttttgagggggttttggc 96  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  17746043 acaagttaggttggcctaactttaggtttgttcctttttgagggggtcttggc 17746095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 19201875 - 19201906
Alignment:
Q  62 actttagatttgttcctttttgagggggtttt 93  Q
    ||||||||||||||||||||||||||||||||    
T  19201875 actttagatttgttcctttttgagggggtttt 19201906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 24355437 - 24355402
Alignment:
Q  70 tttgttcctttttgagggggttttggcctagtcccc 105  Q
    ||||||||||||||||||||||||||||||||||||    
T  24355437 tttgttcctttttgagggggttttggcctagtcccc 24355402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 36313703 - 36313643
Alignment:
Q  46 aagttaggttgacctaactttagatttgttcctttttgagggggttttggcctagtcccct 106  Q
    |||||||||  ||||||||| |||||| ||||||||||||||||  || |||||| |||||    
T  36313703 aagttaggtatacctaacttcagatttattcctttttgagggggcctttgcctagccccct 36313643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 36327912 - 36327852
Alignment:
Q  46 aagttaggttgacctaactttagatttgttcctttttgagggggttttggcctagtcccct 106  Q
    |||||||||  ||||||||| |||||| ||||||||||||||||  || |||||| |||||    
T  36327912 aagttaggtatacctaacttcagatttattcctttttgagggggcctttgcctagccccct 36327852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University