View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_15 (Length: 433)
Name: NF5876_low_15
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 3 - 418
Target Start/End: Complemental strand, 42976103 - 42975688
Alignment:
| Q |
3 |
tattcaggttatgtgactgtgaatgaggagagtggaagagcattgttttactggttgactgaagcaccactgagtcatggacccaattcaaagccactag |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42976103 |
tattcaggttatgtgactgtgaatgaggagagtggaagagcattgttttactggttgactgaagcaccactgagtcatggacccaattcaaagccactag |
42976004 |
T |
|
| Q |
103 |
ttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcacttta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42976003 |
ttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcacttta |
42975904 |
T |
|
| Q |
203 |
cttgaatccttatgcttggaacaattgtaagttgaattctcgtataatgaaattcaaccctcgttgcttcgattcatcgaactaaaaaataccggtacta |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42975903 |
cttgaatccttatgcttggaacaattgtaagttgaattctcgtataatgaaattcaacccttgttgcttcgattcatcgaactaaaaaataccggtacta |
42975804 |
T |
|
| Q |
303 |
atgtttattattttggatgttgcagtggcaaacatattgttcctcgagtctcctgctggtgttggcttttcgtattgtaataaaacaacagacatgcaga |
402 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42975803 |
atgtttattattttggatgttgcagtggcaaacatactgttcctcgagtctcctgctggtgttggcttttcttattgtaataaaacaacagacatgcaga |
42975704 |
T |
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| Q |
403 |
attttggtgaccagaa |
418 |
Q |
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|||||||||||||||| |
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| T |
42975703 |
attttggtgaccagaa |
42975688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 42982000 - 42981769
Alignment:
| Q |
3 |
tattcaggttatgtgactgtgaatgaggagagtggaagagcattgttttactggttgactgaagcaccactgagtcatggacccaattcaaagccactag |
102 |
Q |
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|||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||| | |||||||||||||| | |||||||||||||| |||| ||| |
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| T |
42982000 |
tattcaggctatgtgactgtgaatgaacagagtggaagggcactgttttactggttaattgaagcaccactgaaccgtggacccaattcaaggccattag |
42981901 |
T |
|
| Q |
103 |
ttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcacttta |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
42981900 |
ttttatggcttaatggtggtcctggttgttcttctattgcttatggtgcttctgaagaaattggtccttttcgtattaggcctgatggcaaatcactttt |
42981801 |
T |
|
| Q |
203 |
cttgaatccttatgcttggaacaattgtaagt |
234 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
42981800 |
cttgaatcgttatgcttggaacaattgtaagt |
42981769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 394
Target Start/End: Complemental strand, 42981717 - 42981629
Alignment:
| Q |
306 |
tttattattttggatgttgcagtggcaaacatattgttcctcgagtctcctgctggtgttggcttttcgtattgtaataaaacaacaga |
394 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
42981717 |
tttattattttggatgttgcagtggcaaatatactgttccttgattctcctgctggtgttggtttttcttattgtaataaaacaacaga |
42981629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 26633790 - 26633875
Alignment:
| Q |
89 |
ttcaaagccactagttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
174 |
Q |
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|||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
26633790 |
ttcaaagccacttcttttgtggctcaatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattggtccttttc |
26633875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 26626229 - 26626314
Alignment:
| Q |
89 |
ttcaaagccactagttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
174 |
Q |
| |
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||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||||| ||||| | ||||||||||| ||||||| |
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| T |
26626229 |
ttcaatgccacttcttttgtggctcaatggtggtcctggttgttcttctattgcttttggtgaagctgaagaaattggcccttttc |
26626314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 26641259 - 26641340
Alignment:
| Q |
93 |
aagccactagttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
174 |
Q |
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|||||||| |||| ||| | ||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
26641259 |
aagccacttcttttgtggttcaatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattggtccttttc |
26641340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 34253832 - 34253903
Alignment:
| Q |
103 |
ttttatggcttaatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
174 |
Q |
| |
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|||||||| | |||||||||||||||||||| || ||||||||||||| | || |||||||||||||||| |
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| T |
34253832 |
ttttatggttcaatggtggtcctggttgttcatctattgcttatggtgaggctgaggaaattggtccttttc |
34253903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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