View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_16 (Length: 430)
Name: NF5876_low_16
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 56229729 - 56229430
Alignment:
| Q |
16 |
ataaattcccatgagtgtgtagtgtgtaactttcttcctcggttcaacaacactgacacaacgtttggatgctctgcaatatcaaacgcaaaattgaaag |
115 |
Q |
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| T |
56229729 |
ataaattcccatgagtgtgtagtgtgtaactttcttcctcggttcaacaacactgacacaacgtttggatgctctgcaatatcaaacgcataattgaaag |
56229630 |
T |
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| Q |
116 |
gaaaaacaacacattaatattcttccattcatatcatcagttattttgaaggttacctgcaatgtcagcagcttctttctcttccaggaaagcagcaaag |
215 |
Q |
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| T |
56229629 |
gaaaaacaacacattgatattcttccattcatatcatcagttattttgaaggttacctgcaatgtcagcagcttctttctcttccaggaaagcagcaaag |
56229530 |
T |
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| Q |
216 |
ccattgatattctttgtgtatgaatatatcattgcttcttttgctttctcatgaccgcattacaatttacaatgcaaggattaactttcaagtttcctat |
315 |
Q |
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| T |
56229529 |
ccattgatattctttgtgtatgaatatatcattgcttcttttgctttctcatgactgcattacaatttacaatgcaaggattaactttcaagtttcctat |
56229430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 416
Target Start/End: Complemental strand, 56229357 - 56229329
Alignment:
| Q |
388 |
gatgttccgttgaaattttatcccatcat |
416 |
Q |
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| T |
56229357 |
gatgttccgttgaaattttatcccatcat |
56229329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 39186250 - 39186126
Alignment:
| Q |
157 |
tattttgaaggttacctgcaatgtcagcagcttctttctcttccaggaaagcagcaaagccattgatattctttgtgtatgaatatatcattgcttcttt |
256 |
Q |
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| T |
39186250 |
tattttgaaggttacctgcaatatcagcagcttctttctcttccaagagagcagcaaatccattgatattctttgtgtatgaatatatcattgcctcttt |
39186151 |
T |
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| Q |
257 |
tgctttctcatgaccgcattacaat |
281 |
Q |
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| T |
39186150 |
tgctttctcatggctgaattacaat |
39186126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 39187108 - 39186995
Alignment:
| Q |
19 |
aattcccatgagtgtgtagtgtgtaactttcttcctcggttcaacaacactgacacaacgtttggatgctctgcaatatcaaacgcaaaattgaaaggaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||| || ||||| || |
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| T |
39187108 |
aattcccatgagtgtgtagtgtgtaactttcttcctcggtttaacaacactgacacaacgtttggatgctctacaatataaaacacaagatggaaagaaa |
39187009 |
T |
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| Q |
119 |
aaacaacacattaa |
132 |
Q |
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|||||| ||||||| |
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| T |
39187008 |
aaacaaaacattaa |
39186995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 31197216 - 31197124
Alignment:
| Q |
173 |
tgcaatgtcagcagcttctttctcttccaggaaagcagcaaagccattgatattctttgtgtatgaatatatcattgcttcttttgctttctc |
265 |
Q |
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|||||| || |||||||||| ||||| || | |||||||||||||||||| | || | |||||||| || |||||||||||||||||||| |
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| T |
31197216 |
tgcaatatctgcagcttcttcatcttcaagtagagcagcaaagccattgatgtgtttgttatatgaataaatgattgcttcttttgctttctc |
31197124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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