View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_19 (Length: 425)
Name: NF5876_low_19
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 45654903 - 45654491
Alignment:
| Q |
1 |
ttcactgtgtatgttacatattatcaacaaacgtgaaacaatgccaatgcatctaaatctctactgtagtgtgatcagtaacatcaatgttctcttttta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45654903 |
ttcaccgtgtatgttacatattatcaacaaacgtgaaacaatgccaatgcatctaaatctctactgtagtgtgatcagtaacattaatgttctcttttta |
45654804 |
T |
|
| Q |
101 |
ggtttatagtagatgaagtagcatcgtggtacgataagatgattgcataagtatttttgctgttattgagttgtttgaaatgcatgcttgcgagtatgat |
200 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45654803 |
ggtttatagtagacgaagtagcatcatggtacgataagatgattgcataagtatttttgctgttattgagttgtttgaaatgcatgcttgcgagtatgat |
45654704 |
T |
|
| Q |
201 |
atacattttataatgattactttgtaaatttggttatctgttgagatttacctggcgattttgaacatgatcaactctaaaaagaatcacattaaatgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45654703 |
atacattttataatgattactttgtaaatttggttatctgttgagatttacctggcgattttgaacatgatcaactcaaaaaagaatcacattaaatgtt |
45654604 |
T |
|
| Q |
301 |
tgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccattcctttctatttgctccttttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45654603 |
tgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccattcctttctatttgctccttttt |
45654504 |
T |
|
| Q |
401 |
tctctatcatatt |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45654503 |
tctctatcatatt |
45654491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University