View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_20 (Length: 423)
Name: NF5876_low_20
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_20 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 4643 - 4239
Alignment:
| Q |
1 |
taattaataatgtcacatatgattatctttttacttcatttggatagccaccacatccttaattactttccataatttatcactatttt-gtagggacaa |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
4643 |
taattaataatgtcacatatgattatttttttacttcatttggatagccac---atccttaattattttccataatttatcactatttttgtagggacaa |
4547 |
T |
|
| Q |
100 |
cgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgcaaattatcttagca |
199 |
Q |
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| T |
4546 |
cgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgcaaattatcttagca |
4447 |
T |
|
| Q |
200 |
agtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcctacaatctattccactagtagacaattcacacctcaacaata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4446 |
agtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcctacaatctattccactagtagacaattcacacctcaacaata |
4347 |
T |
|
| Q |
300 |
tgctaatgtccttcttcaagcatatgctcagcaacttagggtcagactctttttctatatgcattatatgagttagaatccgttaacactagggttacat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4346 |
tgctaatgtccttcttcaagcatatgctcagcaactcagggtcagactctttttctatatgcattatataagttagaatccgttaacactagggttacac |
4247 |
T |
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| Q |
400 |
caaatatc |
407 |
Q |
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|||||||| |
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| T |
4246 |
caaatatc |
4239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 87 - 341
Target Start/End: Original strand, 7614649 - 7614900
Alignment:
| Q |
87 |
tttgtagggacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgca |
186 |
Q |
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|||||||||| | || ||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||||||| | || ||| || |
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| T |
7614649 |
tttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttca |
7614748 |
T |
|
| Q |
187 |
aattatcttagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcctacaatctattccactagtagacaattca |
286 |
Q |
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|||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| | ||||||| || | |
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| T |
7614749 |
aattatcttagcaaatgcatctattccattggattgggtagcaatgattaccttaacaactatttcatgcctgc---ttatcccagtggtagacagttta |
7614845 |
T |
|
| Q |
287 |
cacctcaacaatatgctaatgtccttcttcaagcatatgctcagcaacttagggt |
341 |
Q |
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|||| ||||| |||||| |||| ||| |||||||||||||||| ||||| ||||| |
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|
| T |
7614846 |
caccacaacagtatgctgatgttcttattcaagcatatgctcaacaactcagggt |
7614900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 87 - 258
Target Start/End: Original strand, 8491777 - 8491948
Alignment:
| Q |
87 |
tttgtagggacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgca |
186 |
Q |
| |
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|||||||||| | || ||||||||||| || ||||| ||||| ||||||| ||||||||||||| || |||||| |||||||| |||| || ||| || |
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| T |
8491777 |
tttgtagggagatcgtattagttttagtggtcaagtacaaaactaccaaaagacagtgtcccaagtgataaatttgcttggagattagaatacagcttca |
8491876 |
T |
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| Q |
187 |
aattatcttagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcct |
258 |
Q |
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|||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8491877 |
aattatcttagcaaatgcatctattccattggattgggtagcaatgattaccttaacaactatttcatgcct |
8491948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 36362296 - 36362234
Alignment:
| Q |
196 |
agcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcct |
258 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| | ||||| |||||||||||| |
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| T |
36362296 |
agcaagtgtatttactcaattggattgggtagcaatgattacttgaacaactatttcatgcct |
36362234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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