View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_21 (Length: 417)
Name: NF5876_low_21
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Original strand, 52981428 - 52981843
Alignment:
| Q |
2 |
agagactattttaatgagtttaaatattctattgtgtcaagtgcaaaatggacataaaccaagataaagtttttatggtatt-gagataattttgttgtt |
100 |
Q |
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| T |
52981428 |
agagactattttaatgagtttaaatattctattgtgtcaagtgcaaaatggacataaaccaagataaagtttttatggtatttgagataattttgttgtt |
52981527 |
T |
|
| Q |
101 |
tatcttaatgcatgtttatctt--atagaaaaatacgaatatatttgttattgttgcattgatgaggtaattttttcaaaattgaaattgttaaaattta |
198 |
Q |
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| T |
52981528 |
tatcttaatgcatgtttatattttatagaaaaatacgaatatatttgttattgttgcattgatgagataattttttcaaaattgaaattgttaaaattta |
52981627 |
T |
|
| Q |
199 |
tttgcattctacaaagtaaattagataattttgacttgatttcaattgaaaatgctttattttaagaatcttgattacaaacatctattatagtattatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
52981628 |
tttgcattctacaaagtaaattagataattttgacttgatttcaattgaaaatgctttactttaagaatcctgattacaaacatctattatagtattatt |
52981727 |
T |
|
| Q |
299 |
aaaacatactccaaaattctttgttgtcccctctttgctttgtacgccacatctagttt--------------tactccccaaactcgaccccagagcat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
52981728 |
aaaacatactccaaaattctttgttgtcccctctttgctttgtacgccacatctagtttaagtgtttaacccctactccccaaactcgaccccaaagcat |
52981827 |
T |
|
| Q |
385 |
caatcctactccagct |
400 |
Q |
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|||||||||||||||| |
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| T |
52981828 |
caatcctactccagct |
52981843 |
T |
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