View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_22 (Length: 411)
Name: NF5876_low_22
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_22 |
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| [»] scaffold0778 (1 HSPs) |
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| [»] scaffold1192 (2 HSPs) |
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| [»] scaffold1390 (1 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 44 - 363
Target Start/End: Original strand, 25892559 - 25892874
Alignment:
| Q |
44 |
atttcgaggagtatctgtgattcatagtcttc-aagtcaagcgtttatgctatatgtgcctctggtcgtgcactccttttccaaacaggaaggtgtactt |
142 |
Q |
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||||||||||| ||| |||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
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| T |
25892559 |
atttcgaggagaatccgtgattcatagttttctaagtcaagtgtttatgctat--gtgcctctggtcgtgcactccttttccaaaca---aggtgtacct |
25892653 |
T |
|
| Q |
143 |
gcaaaacatactacagtgataaagtaaaacatggtgcaagtagatagaaattatgtgaacatgttaagtaaaactcgctatttatattgacactccaatt |
242 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
25892654 |
gcaaaacatactatagtgataaagtaaaacatggtgcaagtagatagaaattatgtgaacatgttaagtaaaattctctatttatattgacactccaatt |
25892753 |
T |
|
| Q |
243 |
attatgctccagcctgttgctatcttcgttactgagatcattactcgataagttttgtttcttgtggtaattaaatacgagataagcaatgatgtttatc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892754 |
attatgctccagcctgttgctatcttcgttactgagatcattactcgataagttttgtttcttgtggtaattaaatacgagataagcaatgatgtttatc |
25892853 |
T |
|
| Q |
343 |
ttatttgagtgtgtttgttag |
363 |
Q |
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|||||||| |||||||||||| |
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| T |
25892854 |
ttatttgaatgtgtttgttag |
25892874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 228 - 363
Target Start/End: Original strand, 25911221 - 25911356
Alignment:
| Q |
228 |
attgacactccaattattatgctccagcctgttgctatcttcgttactgagatcattactcgataagttttgtttcttgtggtaattaaatacgagataa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
25911221 |
attgacactccaattattatgctccagcctgttgctatcttcgttactgagatcattactcgctaagttttgtttcttgtggtaattaaatacaagataa |
25911320 |
T |
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| Q |
328 |
gcaatgatgtttatcttatttgagtgtgtttgttag |
363 |
Q |
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||||| |||||||| |||||||||| |||||||||| |
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| T |
25911321 |
gcaattatgtttattttatttgagtttgtttgttag |
25911356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 25906835 - 25906921
Alignment:
| Q |
272 |
tactgagatcattactcgataagttttgtttcttgtggtaattaaatacgagataagcaatgatgtttatcttatttgagtgtgttt |
358 |
Q |
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||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
25906835 |
tactgagattgtaactcaataagttttgtttcttgtggtaattaaatacgagattagcaataatgtttatcttatttgagtgtgttt |
25906921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 25906791 - 25906835
Alignment:
| Q |
185 |
gatagaaattatgtgaacatgttaagtaaaactcgctatttatat |
229 |
Q |
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| T |
25906791 |
gatagcaattatgtgaatatgttaagtaaaactccctatttatat |
25906835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0778
Description:
Target: scaffold0778; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 684 - 756
Alignment:
| Q |
284 |
tactcgataagttttgtttcttgtggtaattaaatacgagataagcaatgatgtttatcttatttgagtgtgt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
684 |
tactcgataagttttgtttcttgtggtaattaaatacaagataagcaatgatgtttatcttatttgagtgtgt |
756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1192 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold1192
Description:
Target: scaffold1192; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 1684 - 1598
Alignment:
| Q |
272 |
tactgagatcattactcgataagttttgtttcttgtggtaattaaatacgagataagcaatgatgtttatcttatttgagtgtgttt |
358 |
Q |
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||||||||| | |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||| |
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| T |
1684 |
tactgagattgtaactcgataagttttgtttcttggggtaattaaatacgagattaacaatgatgtttatcttatttgactgtgttt |
1598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1192; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 1773 - 1691
Alignment:
| Q |
142 |
tgcaaaacatactacagtgataaagtaaaacatggtgcaagtagatagaaattatgtgaacatgttaagtaaaactcgctatt |
224 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||| ||||| |
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| T |
1773 |
tgcaaaacatactatggtgataaagtaaaacatggtgcaagtagatagcaattatggggatatgttaagtaaaactccctatt |
1691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1390 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1390
Description:
Target: scaffold1390; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 1736 - 1689
Alignment:
| Q |
349 |
gagtgtgtttgttagaaattacgggacttattatggctatggaatttg |
396 |
Q |
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| T |
1736 |
gagtgtgtttgttagaaattacgggacttattatggctatggaatttg |
1689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 18546 - 18512
Alignment:
| Q |
363 |
gaaattacgggacttattatggctatggaatttgt |
397 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
18546 |
gaaattacgggacttattatggctatggaatttgt |
18512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 20141512 - 20141545
Alignment:
| Q |
363 |
gaaattacgggacttattatggctatggaatttg |
396 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
20141512 |
gaaattacgggacttattatggctatggaatttg |
20141545 |
T |
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