View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_26 (Length: 375)
Name: NF5876_low_26
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 15083213 - 15083578
Alignment:
| Q |
1 |
tattgcatctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15083213 |
tattgcatctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatggcataatct |
15083312 |
T |
|
| Q |
101 |
tcatcttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15083313 |
tcatcttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagag |
15083412 |
T |
|
| Q |
201 |
gcactcccccacacttctttaatatctcctttcctatgaccacaagctttgtacgttcctcatttgatccaaaagctctttgtttaaacaattcccaaca |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15083413 |
gcgctcccccacacttctttaatatctcctttactatgaccgcaagctttgtccgttcctcatttgatccaaaagctctttgtttaaacaattcccaaca |
15083512 |
T |
|
| Q |
301 |
atcctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttgc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15083513 |
atcctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttgc |
15083578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 15429436 - 15429075
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaa-cttaatctcaacgcaggcatgacataatcttcat |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
15429436 |
catctttgggaaataatgcacagaaggcaaaacattgtctcagtttaactggcaaattcaagtaaacttaatctcaatgcaggcatgacattttcttcat |
15429337 |
T |
|
| Q |
105 |
cttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcac |
204 |
Q |
| |
|
|||||||| |||||| |||||||||||| | |||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||| || |
|
|
| T |
15429336 |
cttgtaaattccatattttgctttccttgatatagcgccactccttttcctctcttttaaagcgcaagagacttcctagtgcttttgctgcaagaggtac |
15429237 |
T |
|
| Q |
205 |
tcccccacacttctttaatatctcctttcctatgaccacaagctttgtacgtt---cctcatttgatccaaaagctctttgtttaaacaattcccaacaa |
301 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||| |||| | |||| ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15429236 |
tcccccacatttccttagtatctcctttcctatgaccactagctcttcccgttctacctcatttgttccaaaagcattttgtttaaacaattcccaacaa |
15429137 |
T |
|
| Q |
302 |
tcctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctt |
363 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15429136 |
tcttcgtcagatagcttcgatatatcatgtggaggtattgttcgcatgatttctgctacctt |
15429075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 15331445 - 15331806
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatc |
105 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
15331445 |
catctttgataaatagagcacagaaggcaaagcattgtctcaattttactggcaaattcaagtaacttaatctcaaggtaggcatgacataatcttcatc |
15331544 |
T |
|
| Q |
106 |
ttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcact |
205 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
15331545 |
ttgtaaactccataatttgctttccttgacatagtgccactcatttacctctcttttaaaacgcaagagacttcctagtgctattgctgcaagaggtact |
15331644 |
T |
|
| Q |
206 |
cccccacacttctttaatatctcctttcctatgaccacaagct----ttgtacgttcctcatttgatccaaaagctctttgtttaaacaattcccaacaa |
301 |
Q |
| |
|
|| ||||||||||||| |||||| || ||||| |||||||||| |||| | | ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
15331645 |
ccgccacacttctttagtatctctttccctattaccacaagctcatcttgttc-tacctcatttggcccaaaagctcgttgtttaaacaattcccaacaa |
15331743 |
T |
|
| Q |
302 |
tcctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctaccttt |
364 |
Q |
| |
|
|| | || |||| ||| |||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
15331744 |
tctacatcagatagctttgatacttcaaaaggaggaattgttcccatgatttctgctaccttt |
15331806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 16396937 - 16397299
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatc |
105 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||| || | ||| | ||||||| |||||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
16396937 |
catctttgggaaataatgcacagaaggaaaagcattgccttaattttactggcaaatgcaagtaacttaatctcaaggcaggcatgacataagcttcacc |
16397036 |
T |
|
| Q |
106 |
ttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcact |
205 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| |||| || ||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
16397037 |
ttgtaaattccatagcttgctttccttgacatatagccattccttttcttctcttttaaaccgcaagagacttcctagtgctattgctgcaagagggaat |
16397136 |
T |
|
| Q |
206 |
cccccacacttctttaatatctcctttcctatgaccacaagctttgtacgtt---cctcatttgatccaaaagctctttgtttaaacaattcccaacaat |
302 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || |||||||| | | ||| ||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
16397137 |
cccccacacttctttattatctccttccctacgatcacaagctctttttgttgtacctcatttggtccaaaggctcgttgtttaaacaattcccaacaat |
16397236 |
T |
|
| Q |
303 |
cctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttg |
365 |
Q |
| |
|
| ||||| |||| | | |||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
16397237 |
cttcgtcagatagccttgataattcatgatgaggtattgttcccatgatttttgctacctttg |
16397299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 15453274 - 15452914
Alignment:
| Q |
9 |
ctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatcttg |
108 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||| | |||||||| ||||| ||||||||||| |||||||||||| ||| ||| |||| |
|
|
| T |
15453274 |
ctttgggaaataatgcacagaaggaaaaacattgtctcaattttattggcaaattgaagtagcttaatctcaaggcaggcatgacagaattttcgccttg |
15453175 |
T |
|
| Q |
109 |
taaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcactccc |
208 |
Q |
| |
|
||||||||| |||||||||| ||| |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| || | ||| ||||| |
|
|
| T |
15453174 |
taaactccaaagtttgcttttcttgacatagagccactctttttcttctcttttaaaacgcaagagacttcctagtgcaattgctgccaaaggaactcct |
15453075 |
T |
|
| Q |
209 |
ccacacttctttaatatctcctttcctatgaccacaagctttgtacgtt---cctcatttgatccaaaagctctttgtttaaacaattcccaacaatcct |
305 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||||| | ||| | ||||||| ||||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
15453074 |
ccacacttatttactatctccttgcctatgaccacaagctcttcctgttctacttcatttggtccaaaagctcgttgtttaaacaatttccaacaatctt |
15452975 |
T |
|
| Q |
306 |
cgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttgc |
366 |
Q |
| |
|
||| |||| | | |||| |||||| |||| |||||||||||||||| | |||||||||| |
|
|
| T |
15452974 |
tgtcagatagccttgataaatcatgaagaggcattgttcccatgatttgtcctacctttgc |
15452914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 15335898 - 15336197
Alignment:
| Q |
7 |
atctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatct |
106 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||| ||| | || |||||||| ||||||| |||||| ||||||||||| ||| ||| || |
|
|
| T |
15335898 |
atctttgggaaagagtgcacacaaggcaaaacactgtctcaattttactggtaaattcaaataacttagtctcaaggcaggcatgactgaattatcacct |
15335997 |
T |
|
| Q |
107 |
tgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcactc |
206 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||||| ||||| ||| |||| || | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15335998 |
tgtaaactccatagcttgctttccttgacatagagccactcattttcgtctcttttgaaacacaagagacttcctagtgctattgccgcaagaggcactc |
15336097 |
T |
|
| Q |
207 |
ccccacacttctttaatatctcctttcctatgaccacaagctttgtac---gttcctcatttgatccaaaagctctttgtttaaacaattcccaacaatc |
303 |
Q |
| |
|
|| ||||||| || | |||||| || ||||| ||||||||||||| || ||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
15336098 |
ccacacactttttaactatctcgttccctataaccacaagctttgcacattcttcctcatttggtccaaaggctcgctgtttaaacaattcccaacaatc |
15336197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 15347270 - 15347632
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatc |
105 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||| ||| | |
|
|
| T |
15347270 |
catccttgggaaatagtgcacaaaaggcaaaacattgtctcaattttaccggcaaattcaagtaacttaatctcaacgcaggcatgacagaattctcacc |
15347369 |
T |
|
| Q |
106 |
ttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcact |
205 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||| |||| || ||||| ||| |||||| ||||| | |||||| |||||| |||| || ||||| ||| |
|
|
| T |
15347370 |
ttgtaaattccatagcttactttccttgacatagcgccattccttttcttctcgtttaaaccgcaataaacttcccagtgcttttgctgcgagagggact |
15347469 |
T |
|
| Q |
206 |
cccccacacttctttaatatctcctttcctatgaccacaagctttgtacgtt---cctcatttgatccaaaagctctttgtttaaacaattcccaacaat |
302 |
Q |
| |
|
|||| |||||| |||| |||||| || |||||||| |||| | || |||| ||||| ||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
15347470 |
cccctacacttttttactatctctttccctatgactgcaagatctgaccgttcagcctcagttggtccaaatgctcgttgtttaaacaattcccaacaat |
15347569 |
T |
|
| Q |
303 |
cctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttg |
365 |
Q |
| |
|
| || |||| | | ||||||||||| || ||||||||||||||| |||| ||||||| |
|
|
| T |
15347570 |
cagtctcagatagcattgatatatcatgaaagggcattgttcccatgattgctgcaacctttg |
15347632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 16403529 - 16403826
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatc |
105 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||| ||||||| ||| | |||||||| | |||||||| | | || |||| | |||| ||||||||| | |
|
|
| T |
16403529 |
catctttgggaaataatgcacaaaaggaaaaacactgtctcaattttactggcaaattgaggtaacttagttttaaggcagacttgacgtaatcttcacc |
16403628 |
T |
|
| Q |
106 |
ttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcact |
205 |
Q |
| |
|
|| |||||||||||| || ||||||||||||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
16403629 |
ttctaaactccatagcttactttccttcacatagagccactctttttcttctcttttaaaccgcaaaagacttcctagtgctattgccgcaagagggact |
16403728 |
T |
|
| Q |
206 |
cccccacacttctttaatatctcctttcctatgaccacaagctttgtacgtt---cctcatttgatccaaaagctctttgtttaaacaattcccaaca |
300 |
Q |
| |
|
| | ||||||| |||| |||||||||||||||||||||||||||| | || ||||||||| |||||| |||| ||| |||||||||||||||| |
|
|
| T |
16403729 |
cacacacacttttttagtatctcctttcctatgaccacaagcttttcatcttctgcctcatttggtccaaacgctcgttgcctaaacaattcccaaca |
16403826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 16414257 - 16414499
Alignment:
| Q |
1 |
tattgcatctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatct |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||| || || ||||||||||| | | |
|
|
| T |
16414257 |
tatttcatctttgggaaatagtgcacagaaggaaaaacattgtctcaatttaactggtaaattcaagtaacttaaccttaaggcaggcatgacgcagttc |
16414356 |
T |
|
| Q |
101 |
tcatcttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagag |
200 |
Q |
| |
|
||| |||||||| |||||| ||||||||||| |||| | |||||||| |||||||| |||| || |||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
16414357 |
tcaccttgtaaatcccatagcttgctttccttgacattgagccactctatttcctctcttttgaaacgcaagagacttcctaatgccattgcggcaagag |
16414456 |
T |
|
| Q |
201 |
gcactcccccacacttctttaatatctcctttcctatgaccac |
243 |
Q |
| |
|
| ||||||| ||| ||||||| |||||| || ||||||||||| |
|
|
| T |
16414457 |
gtactcccctacatttctttactatctctttccctatgaccac |
16414499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 15357544 - 15357901
Alignment:
| Q |
11 |
ttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatcttgta |
110 |
Q |
| |
|
|||| ||| |||||||| |||||||| || || |||| ||| | ||||||||||||||||||||| ||||| | || |||||| ||| ||| |||||| |
|
|
| T |
15357544 |
ttggaaaaaagtgcacaaaaggcaaagcactgcctcaattttaccggcaaattcaagtaacttaacctcaaggaagacatgactgaattctcaccttgta |
15357643 |
T |
|
| Q |
111 |
aactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcactccccc |
210 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||| || ||||| ||| |||||| || |||| ||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
15357644 |
aactccatagattgctttccttgacatagcgccattccttttcttctcgtttaaaacgtaagaaacttcctagtgcttttgccgcaagaggaactccccc |
15357743 |
T |
|
| Q |
211 |
acacttctttaatatctcctttcctatgaccacaagctttgtacgt---tcctcatttgatccaaaagctctttgtttaaacaattcccaacaatcctcg |
307 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||| | | ||| |||||||||| |||||| |||| || |||| ||||||||| ||||| | |
|
|
| T |
15357744 |
acacttttttactatctccttccctatgaccacaagatcgggccgttcatcctcatttggtccaaatgctcgctgcttaatcaattcccagcaatctgtg |
15357843 |
T |
|
| Q |
308 |
tcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttg |
365 |
Q |
| |
|
|| |||| | | |||| |||||| | || ||||||||||||||| |||| ||||||| |
|
|
| T |
15357844 |
tcagatagcattgataaatcatgagagggcattgttcccatgattgctgcaacctttg |
15357901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 17927860 - 17928154
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatc |
105 |
Q |
| |
|
||||||| ||||||| ||| |||||||||| |||||||||| |||| |||||| | |||||||||||||||||| || |||||||| | | ||| | |
|
|
| T |
17927860 |
catcttttggaaatatagcagagaaggcaaagcattgtctcaacttaaccggcaagtacaagtaacttaatctcaaggcctgcatgacagagttctcacc |
17927959 |
T |
|
| Q |
106 |
ttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcact |
205 |
Q |
| |
|
|||||| ||||| | ||||| ||||| |||||| ||| |||||||| ||| ||||||||||||| |||||||||| || |||||| |||||||||||| |
|
|
| T |
17927960 |
ttgtaagctccacaacttgctgtccttgacatagatccattctttttcttctcttttaaagcgcaacagacttcctaatgttattgctgcaagaggcact |
17928059 |
T |
|
| Q |
206 |
cccccacacttctttaatatctcctttcctatgaccacaagctttgtacgtt---cctcatttgatccaaaagctctttgtttaaacaattccca |
297 |
Q |
| |
|
|||| ||||||||||| ||||| || || || ||||||||||||| ||| ||||||||| |||||| |||| |||||||||||| ||||| |
|
|
| T |
17928060 |
cccctacacttctttaggatctctttcccaattgccacaagctttgtcagttctacctcatttggtccaaatgctcgttgtttaaacaactccca |
17928154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 30521207 - 30521164
Alignment:
| Q |
194 |
gcaagaggcactcccccacacttctttaatatctcctttcctat |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
30521207 |
gcaagaggcaatcccccacacttctttactatctcttttcctat |
30521164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 30561547 - 30561504
Alignment:
| Q |
194 |
gcaagaggcactcccccacacttctttaatatctcctttcctat |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
30561547 |
gcaagaggcaatcccccacacttctttactatctcttttcctat |
30561504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 8187370 - 8187732
Alignment:
| Q |
6 |
catctttgggaaatagtgcacagaaggcaaaacattgtctcagtttaagcggcaaattcaagtaacttaatctcaacgcaggcatgacataatcttcatc |
105 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| || ||| | |
|
|
| T |
8187370 |
catcttttggaaaaagtgcacaaaaggcaaaacattgtctcaattttattggcaaattcaagtaacttaatctcaaggcaggcatgactgtattctcacc |
8187469 |
T |
|
| Q |
106 |
ttgtaaactccatagtttgctttccttcacatagtgccactctttttcctctgttttaaagcgcaagagacttcctagtgctattgcagcaagaggcact |
205 |
Q |
| |
|
||||||||||||||| || |||||| |||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
8187470 |
ttgtaaactccatagattactttccaagacatagagccactccttttcctctcttttaaaacgcaagagacttcctagtgctattgctgcaagaggtaca |
8187569 |
T |
|
| Q |
206 |
cccccacacttctttaatatctcctttcctatgaccacaagctttgtacgt---tcctcatttgatccaaaagctctttgtttaaacaattcccaacaat |
302 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||||| || | || ||||||| || |||||| |||| || | |||||| ||||||||||| |
|
|
| T |
8187570 |
cccccacacttttttgctatctccttccctatgaccacaagctctgcatgttcatcctcatctgttccaaaggctcgttctctaaacatttcccaacaat |
8187669 |
T |
|
| Q |
303 |
cctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgctacctttg |
365 |
Q |
| |
|
| ||| ||| |||||| |||||| || ||| |||||||||||||| |||| ||||||| |
|
|
| T |
8187670 |
cagtgtcacatagaatcgataaatcatgaggtggtcttgttcccatgattgctgcaacctttg |
8187732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 20296174 - 20296105
Alignment:
| Q |
184 |
tgctattgcagcaagaggcactcccccacacttctttaatatctcctttcctatgaccacaagctttgta |
253 |
Q |
| |
|
|||| |||| |||||||||| ||| ||| ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
20296174 |
tgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctatttccacaagctttgta |
20296105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 52352462 - 52352515
Alignment:
| Q |
173 |
agacttcctagtgctattgcagcaagaggcactcccccacacttctttaatatc |
226 |
Q |
| |
|
|||| ||||| |||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
52352462 |
agacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc |
52352515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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