View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_28 (Length: 368)
Name: NF5876_low_28
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 1781924 - 1782264
Alignment:
| Q |
18 |
tgaacatgtacatcctacatgctgacttcgtgagaccctcaaaacttttcactaccaagagaaataataaagtagcaagggggtctccttgtttaggcct |
117 |
Q |
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| T |
1781924 |
tgaacatgtacatcctacatgctgacttcgtgagaccctcaaaacttttcactaccaagagaaataataaagtagcaagggggtctccttgtttaggcct |
1782023 |
T |
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| Q |
118 |
ctttgtcgagatttcccctataggacaaccaattaccaaaactaacaaattatttgtacaaatacaagtcttcatccatttaatccaaaaccaaaccttc |
217 |
Q |
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| T |
1782024 |
ctttgtcgagatttcccctataggacaaccaattaccaaaactaacaaattatttgtacaaatacaagtcttcatccatttaatccaaaaccaaaccttc |
1782123 |
T |
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| Q |
218 |
ccagcatatagtccaaaaaagtccaatccaccaggtcataagtttaatcaaatttcacaattaacatcaagtagtttttcccccacttcatcctcctcgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1782124 |
ccagcatatagtccaaaaaagtccaatccaccaggtcataagtttaattaaatttcacaattaacatcaagtagtttttcccccacttcatcctcctcgc |
1782223 |
T |
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| Q |
318 |
atctgaaagtgagaaaaacacaagaaaagggtggatctgtg |
358 |
Q |
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||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
1782224 |
atctgaaggtgagaaaaacacaagaagagggttgatctgtg |
1782264 |
T |
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