View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_3 (Length: 654)

Name: NF5876_low_3
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_3
NF5876_low_3
[»] chr8 (1 HSPs)
chr8 (1-654)||(41728905-41729558)


Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 41728905 - 41729558
Alignment:
Q  1 atttctttacattttatgcatattgttgtgtatatggcaaggaaattgtgaccctgttgaagataaagaggttttgcttgattttgtgaacaagtttccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41728905 atttctttacattttatgcatattgttgtgtatatggcaaggaaattgtgaccctgttgaagataaagaggttttgcttgattttgtgaacaagtttccc 41729004  T
Q  101 ccttcaaggactttgaattggaatcaaatttcttctgtttgtgataattggactggtgttacttgcaatgaagataggtctagagttatagctatccgtt 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729005 ccttcaaggactttgaattggaatcaaagttcttctgtttgtgataattggactggtgttacttgcaatgaagataggtctagagttatagctatccgtt 41729104  T
Q  201 tacctggtgtcggatttcatggcaatattccaccaaatactatcagtaacctttcagctcttgaaattcttagtcttagatccaatttaatatctgggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729105 tacctggtgtcggatttcatggcaatattccaccaaatactatcagtaacctttcagctcttgaaattcttagtcttagatccaatttaatatctgggtt 41729204  T
Q  301 ttttccaagtgatttttccaatctaaaaaacttgtcttttcttcatcttcagtccaataatttatctgggcctttgcctgatttctcagtttggaagaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729205 ttttccaagtgatttttccaatctaaaaaacttgtcttttctttatcttcagtccaataatttatctgggcctttgcctgatttctcagtttggaagaat 41729304  T
Q  401 cttactgttgttaatttgtctaataacaaattcaacggtactattccgctttccctttctaatttgactcagcttgctggtttgaatcttgcaaataatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  41729305 cttactgttgttaatttgtctaataacaaattcaacggtactattccgctttcgctttctaatttgactcagcttgctggtttgaaccttgcaaataatt 41729404  T
Q  501 ccctttctggtgaaattcctgatattcatttctcaaggttacaggtgctgaatttgtctaacaatgatttacatggtactgtgcctaaatctttacaaag 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729405 ccctttctggtgaaattcctgatattcatttctcaaggttacaggtgctgaatttgtctaacaatgatttacatggtactgtgcctaaatctttacaaag 41729504  T
Q  601 gtttcctgattcagcgtttgttgggaataacattactctcagaaattttactgc 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729505 gtttcctgattcagcgtttgttgggaataacattactctcagaaattttactgc 41729558  T

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