View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_30 (Length: 360)
Name: NF5876_low_30
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 19962744 - 19962395
Alignment:
| Q |
15 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattgtatattccagttttgatccataa |
114 |
Q |
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| T |
19962744 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattgtatattccagttttgatccataa |
19962645 |
T |
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| Q |
115 |
agattcaaactttggttgtaattttgtgacccagttgttccattctggttgt---------gggattctccatccattgtactttacttgtaatggcaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || |
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| T |
19962644 |
agattcaaactttggttgtaattttgtgacccagttgttccattctggttgtaactttggctgtattctccatccactgtactttacttgtaatggcgaa |
19962545 |
T |
|
| Q |
206 |
tttgt------------ggaaattgagaaaaggggtggttgtggtggtggtgttgagtgtttgatggaagatttgatgaaaaaagcttctctgagagtta |
293 |
Q |
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||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
19962544 |
tttgtggtggtttgagaggaaatagagaaaaggg------gtggtggtggtgttgaatgtttgatggaagatttgatgaaaaaagcttgtttgagagtta |
19962451 |
T |
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| Q |
294 |
ggttttcacctgttgatggtgaaaccatgagttcttcttcttttgtttctatgatg |
349 |
Q |
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| T |
19962450 |
ggttttcaccggttgatggtgaaaccatgagttcttcttcttttgtttctatgatg |
19962395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 20027659 - 20028008
Alignment:
| Q |
15 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattgtatattccagttttgatccataa |
114 |
Q |
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| T |
20027659 |
aacaccatctattagcaagttgaagcatcaaatcatcatcccttttgatttcataagtagaagctttgattgcatggtatattccagttttgatccataa |
20027758 |
T |
|
| Q |
115 |
agattcaaactttggttgtaattttgtgacccagttgttccattctggttgt---------gggattctccatccattgtactttacttgtaatggcaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
20027759 |
agattcaaactttggttgtaattttgtgacccagttgttccattctggttgtaactttggctgtattctccatccattgtactttacttgtaatggcgaa |
20027858 |
T |
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| Q |
206 |
tttgtgg------------aaattgagaaaaggggtggttgtggtggtggtgttgagtgtttgatggaagatttgatgaaaaaagcttctctgagagtta |
293 |
Q |
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|| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20027859 |
ttggtggtggtttgagagaaaatagagaaaaggg------gtggtggtggtgttgagtgtttgatggaagatttgatgaaaaaagcttctctgagtgtta |
20027952 |
T |
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| Q |
294 |
ggttttcacctgttgatggtgaaaccatgagttcttcttcttttgtttctatgatg |
349 |
Q |
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| T |
20027953 |
ggttttcacccgttgatggtgaaaccatgagttcttcttcttttgtttctatgatg |
20028008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 20020844 - 20021041
Alignment:
| Q |
15 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattgtatattccagttttgatccataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
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| T |
20020844 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctgtgatagcatggtatattccagttttgatccatag |
20020943 |
T |
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| Q |
115 |
agattcaaactttggttgtaattttgtgacccagttgttccattctggttgtgggattctccatccattgtactttacttgtaatggcaaatttgtgg |
212 |
Q |
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| |||||||||||||| |||||| ||||||| || ||||||||| |||||| |||||| |||| ||||| |||| ||||||||||||||||| |
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| T |
20020944 |
aaattcaaactttggtcttaatttgttgacccatttcttccattcttcttgtggagctctccacccataatacttaacttctaatggcaaatttgtgg |
20021041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 19967434 - 19967237
Alignment:
| Q |
15 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattgtatattccagttttgatccataa |
114 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
19967434 |
aacaccatctatcagcaagttgaaggatcaaagcatcattccttttgatttcataagtagaagctgtgatagcatggtatattccagttttgatccataa |
19967335 |
T |
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| Q |
115 |
agattcaaactttggttgtaattttgtgacccagttgttccattctggttgtgggattctccatccattgtactttacttgtaatggcaaatttgtgg |
212 |
Q |
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| T |
19967334 |
aaattcaaactttggtcgtaatttgttgacccatttcttccattcatcttgcggccttctccacccattgtacttcacttctagtggcaaatttgtgg |
19967237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 14856456 - 14856545
Alignment:
| Q |
15 |
aacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattgtatattccagttt |
104 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
14856456 |
aacaccatctattagcaagttcaagaataaaatcatcatcccttttgatttcataagtagaagctgtgattgcatgatatattccagttt |
14856545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 14856869 - 14856985
Alignment:
| Q |
96 |
ttccagttttgatccataaagattcaaactttggttgtaattttgtgacccagttgttccattctggttgtgggattctccatccattgtactttacttg |
195 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||| ||||||| || ||||||||| |||||| ||||||| ||||||||||| |||| |
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| T |
14856869 |
ttccaattttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccattcttcttgtggagttctccacccattgtacttcacttc |
14856968 |
T |
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| Q |
196 |
taatggcaaatttgtgg |
212 |
Q |
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||||||||||||||||| |
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| T |
14856969 |
taatggcaaatttgtgg |
14856985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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