View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_36 (Length: 334)
Name: NF5876_low_36
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 135 - 318
Target Start/End: Complemental strand, 39616164 - 39615981
Alignment:
| Q |
135 |
tttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgttt |
234 |
Q |
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| T |
39616164 |
tttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgttt |
39616065 |
T |
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| Q |
235 |
gcgtcagatatcgatgaaggccaaagtcgtcttttaatgccacttaaagaagacgaacttggttttctcaccaagacagaaaag |
318 |
Q |
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| T |
39616064 |
gcgtcagatatcgatgaaggccaaagtcgtcttttaatgccacttaaagaagacgaacttggttttctcaccaagacagaaaag |
39615981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 39616289 - 39616225
Alignment:
| Q |
10 |
gatgaagttagcatgtcttatgcggaaagaagaacgaaaccaaagaccacgaagaaggtggaacc |
74 |
Q |
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| T |
39616289 |
gatgaagttagcatgtcttatgcggaaagaagaacgaaaccaaagaccacgaagaaggtggaacc |
39616225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 287
Target Start/End: Original strand, 1580821 - 1580964
Alignment:
| Q |
144 |
acctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgtttgcgtcagat |
243 |
Q |
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| T |
1580821 |
acctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagat |
1580920 |
T |
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| Q |
244 |
atcgatgaaggccaaagtcgtcttttaatgccacttaaagaaga |
287 |
Q |
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| T |
1580921 |
ctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaaga |
1580964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 1603994 - 1603851
Alignment:
| Q |
144 |
acctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgtttgcgtcagat |
243 |
Q |
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| T |
1603994 |
acctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagat |
1603895 |
T |
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| Q |
244 |
atcgatgaaggccaaagtcgtcttttaatgccacttaaagaaga |
287 |
Q |
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| T |
1603894 |
ctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaaga |
1603851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 144 - 306
Target Start/End: Original strand, 1587321 - 1587483
Alignment:
| Q |
144 |
acctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgtttgcgtcagat |
243 |
Q |
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| T |
1587321 |
acctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagat |
1587420 |
T |
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| Q |
244 |
atcgatgaaggccaaagtcgtcttttaatgccacttaaagaagacgaacttggttttctcacc |
306 |
Q |
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| T |
1587421 |
ctcagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcacc |
1587483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 1590902 - 1590760
Alignment:
| Q |
144 |
acctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgtttgcgtcagat |
243 |
Q |
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| T |
1590902 |
acctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcggat |
1590803 |
T |
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| Q |
244 |
atcgatgaaggccaaagtcgtcttttaatgccacttaaagaag |
286 |
Q |
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| T |
1590802 |
ctcagggatgaccaaaatcgtcttttaatgccgcttaaagaag |
1590760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1587235 - 1587282
Alignment:
| Q |
19 |
agcatgtcttatgcggaaagaagaacgaaaccaaagaccacgaagaag |
66 |
Q |
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| T |
1587235 |
agcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaag |
1587282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 306
Target Start/End: Complemental strand, 19270456 - 19270323
Alignment:
| Q |
173 |
agaacaagatcaaggagttgaatggcactgatatcagatatatcatgtcaaagaaattgtttgcgtcagatatcgatgaaggccaaagtcgtcttttaat |
272 |
Q |
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| T |
19270456 |
agaacaagatcaaagagttgaatggcactgatatcaaatatatcatgggtaaaaaattgtttgcatcaaatctcaaagatgaccaaaatcgtctattaat |
19270357 |
T |
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| Q |
273 |
gccacttaaagaagacgaacttggttttctcacc |
306 |
Q |
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| T |
19270356 |
gtcgattaaagaagtcaaagttgattttctcacc |
19270323 |
T |
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