View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_37 (Length: 331)
Name: NF5876_low_37
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 26 - 331
Target Start/End: Complemental strand, 14272969 - 14272664
Alignment:
| Q |
26 |
gcaccaaactctcttccttcttgtgcaacattcatggacgactcaacacagccactgctcacacccaaaccaaaagaacaacgccatggaatcaacacaa |
125 |
Q |
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| T |
14272969 |
gcaccaaactctcttccttcttgtgcaacattcatggacgactcaacacagccactgctcacacctaaaccaaaagaacaacgccatggaatcaacacaa |
14272870 |
T |
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| Q |
126 |
aatttccctcaccaccatctaacactgcaatattcacggctgcagcccccgacatggacttgatcacaagccccaaagacttcttcaaacaattcatcgt |
225 |
Q |
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| T |
14272869 |
actttccctcaccaccatctaacaccgcaatattcacggctgcagcccccgacatggacttgatcacaagccccaaagacttcttcaaacaattcatcgt |
14272770 |
T |
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| Q |
226 |
tgagtcgaagaagctgtggtaccttgctgggcctgccatcttctccttcgtctccaaatattcccttggagctgtcactcaaatcttcgccggtcatgtt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14272769 |
tgagtcgaagaagctgtggtaccttgctgggcctgccatcttctccttcgtctccaaatattcccttggagctgtcactcaaatcttcgccggtcatgtt |
14272670 |
T |
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| Q |
326 |
agtacc |
331 |
Q |
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|||||| |
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| T |
14272669 |
agtacc |
14272664 |
T |
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