View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_38 (Length: 320)
Name: NF5876_low_38
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 52593792 - 52593479
Alignment:
| Q |
1 |
cccttaatttcaagcaagcaacacaacccacacacacgctttcccacacgtgataaacttaataatgattggcgcttaaatttaccaattatttattcct |
100 |
Q |
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| T |
52593792 |
cccttaatttcaagcaagcaacacaacccacacacacgctttcccacacgtgataaacttaataatgattggcgcttaaatttaccaattatttattcct |
52593693 |
T |
|
| Q |
101 |
ttttaccaataaataactagcagtagtagttggtgttaagcaagtaaaggagttaatattatttaattggttggtaccgttcttccaatgataaggtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52593692 |
ttttaccaataaataactagcagtagtagttggtgttaagcaagtaaaggagttaatattatttaattggttggtaccgttcttccaatgataaggtggt |
52593593 |
T |
|
| Q |
201 |
cggtctttctttttgtttgaaattaaaaacatatactctctgttgttggagttgccatttgtctctccttccttcttcaaactggattcataattctcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52593592 |
cggtctttctttttgtttgaaattaaaaacatatactctctgttgttggagttgccatttgtctctccttccttcttcaaactggattcataattctcta |
52593493 |
T |
|
| Q |
301 |
ttgcacctatgctt |
314 |
Q |
| |
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|||||||| ||||| |
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| T |
52593492 |
ttgcacctctgctt |
52593479 |
T |
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