View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_39 (Length: 319)
Name: NF5876_low_39
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 32659195 - 32658906
Alignment:
| Q |
20 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32659195 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaataaca |
32659096 |
T |
|
| Q |
120 |
aatgtgacggtgtccaaaatgttaatagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttga |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32659095 |
aatgtgacggtgtccaaaatgttaacagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttatgaccgcctcttgtgttga |
32658996 |
T |
|
| Q |
220 |
aactgagaaggaatttaattctcgcaaacgtaatcgggaatcgcctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32658995 |
aactgagaaggaatttaattctcgcaaacgtaatcgggaatcgcctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
32658906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 32583634 - 32583345
Alignment:
| Q |
20 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
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|
| T |
32583634 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattagacactaaaaatcaaaataaca |
32583535 |
T |
|
| Q |
120 |
aatgtgacggtgtccaaaatgttaatagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttga |
219 |
Q |
| |
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|||| || ||| ||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
32583534 |
aatgcgatggtctccaaaatgttaacagtgatggtcatggcggcgacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcgga |
32583435 |
T |
|
| Q |
220 |
aactgagaaggaatttaattctcgcaaacgtaatcgggaatcgcctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32583434 |
aactgagaaggaatttaattctcgcaaacgtaatcgggaatcgcctgcagctcaaccattaacagaaccatcaaaggggaaggagtataa |
32583345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 32633475 - 32633186
Alignment:
| Q |
20 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
32633475 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccataagagtgatggttatttattggacactaaaaatcaaaataaca |
32633376 |
T |
|
| Q |
120 |
aatgtgacggtgtccaaaatgttaatagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttga |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
32633375 |
aatgtgacggtgtccaaaatgttaacagtgatggtaatggcggctacgatgaaaaattgggcactggtgttaaggatgatataaccgcctcttgtgcgga |
32633276 |
T |
|
| Q |
220 |
aactgagaaggaatttaattctcgcaaacgtaatcgggaatcgcctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32633275 |
aactgagaaggaatttaattctcgcaaacgtaaactagaatcgcctatagctcaaccattaacagaaccatcaaaggggaaggagtataa |
32633186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 32601304 - 32601013
Alignment:
| Q |
20 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||| |
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|
| T |
32601304 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccacaagagtgatggttatttatcggacactaaaatccaaaataaca |
32601205 |
T |
|
| Q |
120 |
aatgtgacggtgtccaaaatgttaatagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaagg--atgttataaccgcctcttgtgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
32601204 |
aatgtgacggtgtccaaaatgttaacggtgatggtaatggcggcgacgatgaaaaattgggcactggtgttaaggatatgatataaccgcctcttgtgcg |
32601105 |
T |
|
| Q |
218 |
gaaactgagaaggaatttaattctcgcaaacgtaatcgggaatcgcctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
309 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32601104 |
gaaactgagaaagaattttattttcgcaaacgtaaacgggaatcgcctgtagcacaaccattaacagaaccatcaaaggggaaggagtataa |
32601013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 41149553 - 41149308
Alignment:
| Q |
20 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaaca |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
41149553 |
gattttgtcccgttagaatcgaataacatcataaagcgcattgattttgttaacaacaagagtgatggttatttattggacactaattaccaaaataaca |
41149454 |
T |
|
| Q |
120 |
aatgtgacggtgtccaaaatgttaatagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttga |
219 |
Q |
| |
|
|||| | | ||| || |||||||| ||| ||||||||| | || ||||||||||| || |||||||||||| ||| ||||| ||||||||| | |
|
|
| T |
41149453 |
aatgcaaagctgttcacaatgttaacagtgatggtaatgcggatgatgatgaaaaattcggtactggtgttaagaatgagctaaccacctcttgtgcggg |
41149354 |
T |
|
| Q |
220 |
aa---ctgagaaggaatttaattctcgcaaacgtaatcgggaatcg |
262 |
Q |
| |
|
|| |||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
41149353 |
aacttctgagaaggagttttattctcgcaaacgtaaacgggaatcg |
41149308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 41176004 - 41175762
Alignment:
| Q |
20 |
gattttgtcccgttagaatcgagtaacatcataaagcacattgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaaca |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
41176004 |
gattttgtcccattagaatcgagtaacatcataaagcgcattgaatttgttaaccacaagagtgatggttatttattggacactaattaccaaaataaca |
41175905 |
T |
|
| Q |
120 |
aatgtgacggtgtccaaaatgttaatagttatggtaatggcggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttga |
219 |
Q |
| |
|
|||| || ||||||||||||||| | || ||| || | | || || |||||||| |||| ||||||| ||||| | || | || |||||||| || |
|
|
| T |
41175904 |
aatgggagggtgtccaaaatgttgacggtgatgatatt---gatgatgacgaaaaattcggcaatggtgttgaggattatctagctgcgtcttgtgtgga |
41175808 |
T |
|
| Q |
220 |
aa---ctgagaaggaatttaattctcgcaaacgtaatcgggaatcg |
262 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41175807 |
aatctctgagaaggaatttaattctcgcaaacgtaaacgggaatcg |
41175762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 41165458 - 41165412
Alignment:
| Q |
263 |
cctgtagctcaaccattaacagaaccatcaaaggggaaggagtataa |
309 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
41165458 |
cctgttgctcaaacattaccagaaccatcaaagtggaaggagtataa |
41165412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 60 - 261
Target Start/End: Complemental strand, 26400083 - 26399879
Alignment:
| Q |
60 |
ttgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaacaaatgtgacggtgtccaaaatgttaatagttatggtaatgg |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||| |||||| |||||| ||||||||||| |||||||||||| |||| || ||||||||| |
|
|
| T |
26400083 |
ttgatttggttaaccacaagagtgatggtaatttattggacgctaaaagccaaaacaacaaatgtgagggtgtccaaaattttaacggtgatggtaatga |
26399984 |
T |
|
| Q |
160 |
cggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttgaaa---ctgagaaggaatttaattctcgcaaacgtaatcgg |
256 |
Q |
| |
|
| | | |||||||||| |||||||||| |||| | | || || |||||| ||| |||| ||||||| |||||| |||||||||||||||| || |
|
|
| T |
26399983 |
ggatggcaatgaaaaattcagcactggtgtcgaggacgatctagccacctcttctgtggaaacttctgagaatgaatttcattctcgcaaacgtaaaagg |
26399884 |
T |
|
| Q |
257 |
gaatc |
261 |
Q |
| |
|
||||| |
|
|
| T |
26399883 |
gaatc |
26399879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 261
Target Start/End: Original strand, 21014469 - 21014676
Alignment:
| Q |
60 |
ttgatttggttaaccagaagagtgatggttatttattggacactaaaaaccaaaagaacaaatgtgacgg---tgtccaaaatgttaatagttatggtaa |
156 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |||||| | |||| ||||||||||| || |||||||||| |||| || ||||||| |
|
|
| T |
21014469 |
ttgatttggttaaccactagagtgatggtaatttattggacgctaaaagctaaaacaacaaatgtgagggtactgtccaaaattttaacggtgatggtaa |
21014568 |
T |
|
| Q |
157 |
tggcggcgacgatgaaaaattaggcactggtgttaaggatgttataaccgcctcttgtgttgaaa---ctgagaaggaatttaattctcgcaaacgtaat |
253 |
Q |
| |
|
|| | ||| |||||||||| |||||||||| |||| | | || | ||| || ||| |||| ||||||| |||||| |||||||||||||||| |
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|
| T |
21014569 |
tgaggatgacaatgaaaaattcagcactggtgtcgaggacgatctaggcacctgttttgtggaaacttctgagaatgaatttcattctcgcaaacgtaaa |
21014668 |
T |
|
| Q |
254 |
cgggaatc |
261 |
Q |
| |
|
||||||| |
|
|
| T |
21014669 |
agggaatc |
21014676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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