View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_4 (Length: 641)
Name: NF5876_low_4
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 2561495 - 2561130
Alignment:
| Q |
1 |
ctcaacattaatgtggttctgagagtaatttaaaagtttgcaattaaaagtattacgccaaaataaagctaacccgccaccacaaccttgtctatcaaca |
100 |
Q |
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| T |
2561495 |
ctcaacattaatgtggttctgagagtaatttaaaagtttgcaattaaaagtattacgccaaaataaagctaacccgccaccacgaccttgtctatcaaca |
2561396 |
T |
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| Q |
101 |
gcaaaacaattttgaaagccaggaatatgacggaattcttcgactttattactgaagactagtgtctcacttagaaagagggtgtctggcttgtaatatc |
200 |
Q |
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| T |
2561395 |
gcaaaacaattttcaaagccaggaatatgatggaattcctcgactttattactgaagactagtgtctcacttagaaagagggcatctggcttgtaatatc |
2561296 |
T |
|
| Q |
201 |
gaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcatttttagaaatgcacaccctgacaagaa |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2561295 |
gaactaggaactttaaattagggactgcgctcaggctccctagacctcgacagttctagctaataacactcatttttagaaatgcacaccctgacaagaa |
2561196 |
T |
|
| Q |
301 |
gcaagatcatattgaaacaatagcatatggagggtgtttgacgcttcaaagtaacacaagatccta |
366 |
Q |
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| T |
2561195 |
gcaagatcatattgaaacaatagcatatggagggtgtttgacgcttcaaagtaacacaagatccta |
2561130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 381 - 616
Target Start/End: Complemental strand, 2561077 - 2560842
Alignment:
| Q |
381 |
gaataagagtgaaacgtatggttagaaataacatatgcaagtctcggttcaaaactagaggaggacaaataacatcaggcttatataatcaatatctata |
480 |
Q |
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| T |
2561077 |
gaataagagtgaaacgtgtggttagaaataacatatgcaagtctcggttcaaaactagaggaggacaaataacatcaggcttatataatcaatatctata |
2560978 |
T |
|
| Q |
481 |
accatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatccacttcaattgaaac |
580 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2560977 |
accatgattgattaacttgaaattgagacacgttttgtatttactagggaattgacggactatggaattacatttaagaataatccacttcaattgaaac |
2560878 |
T |
|
| Q |
581 |
ttgatcccattacatagaatacacacatacatacct |
616 |
Q |
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| T |
2560877 |
ttgatcccattacatagaatacacacatacatacct |
2560842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 2559536 - 2559430
Alignment:
| Q |
469 |
tcaatatctataaccatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatccac |
568 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559536 |
tcaatatccataaccatgattgattaacttgaaattgagacacgttttgtatttaccagggaattgacggactatggaattacatctaagaataatccac |
2559437 |
T |
|
| Q |
569 |
ttcaatt |
575 |
Q |
| |
|
||||||| |
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| T |
2559436 |
ttcaatt |
2559430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 32953556 - 32953483
Alignment:
| Q |
200 |
cgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcat |
273 |
Q |
| |
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|||| |||||||||||||||||||| || |||| |||| |||| ||||||||| ||| | ||||| |||||||| |
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| T |
32953556 |
cgaattaggaactttaaattaggaattgtgctcgggctacctaaacctcgacaattccaactaatgacactcat |
32953483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 25908301 - 25908393
Alignment:
| Q |
164 |
gtctcacttagaaagagggtgtctggcttgtaatatcgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttc |
256 |
Q |
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|||||||||| ||||||||||| ||||| ||||| ||||||| ||||||| || |||||| |||||||| | ||| |||||| |||||| |
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| T |
25908301 |
gtctcacttaagaagagggtgtccggcttataatagcgaactaaatactttaattttggaactacgctcaggttcgctaaacctcggcagttc |
25908393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 9613522 - 9613594
Alignment:
| Q |
203 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcattt |
275 |
Q |
| |
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|||||| |||||||||||||||||| |||| |||| |||| ||| ||||||||| | | ||||| |||||||| |
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| T |
9613522 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttccaccaaataagactcattt |
9613594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 46094292 - 46094362
Alignment:
| Q |
203 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcat |
273 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||| |||| ||| ||||| ||| | ||||| |||||||| |
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| T |
46094292 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcat |
46094362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 3966317 - 3966370
Alignment:
| Q |
203 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttc |
256 |
Q |
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|||||| |||||||||||||||||| |||| |||| |||| ||| ||||||||| |
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| T |
3966317 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttc |
3966370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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