View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_40 (Length: 316)
Name: NF5876_low_40
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 27608605 - 27608326
Alignment:
| Q |
6 |
aggagcacagattggaataatgacatatagctcattgatgggcgcctgtagcaaggtatgtatgtagggtcaagtaaaatggtttaaaggaaaaaacaaa |
105 |
Q |
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| T |
27608605 |
aggagtacagattggaataatgacatatagctcattgatgggcgcctgtagcaaggtatgtatgtaggatcaagtaaaatggtttaaaggaaaaaacaaa |
27608506 |
T |
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| Q |
106 |
tcaaaattgacgcacatgaaaatgaaggtggattataagtgaaccatccaaaccatcaaaacatatagttcaccatgagccataaaaattaacctatagg |
205 |
Q |
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| T |
27608505 |
tcaaaattgacgcacatgaaaatgaaggtggattataagtgaac---------catcaaaacatatagttcaccatgagccataaaaattaacctatagg |
27608415 |
T |
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| Q |
206 |
tgataattcttttttgttttactgcatctaagtgttctctatttttcttattgcatataagtgtccaccattgctttgttaacactgcc |
294 |
Q |
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| T |
27608414 |
tgataattcttttttgttttactgcatctaagtgttctctatttttcttattgcatataagtgtccaccattgctttgttaacactgcc |
27608326 |
T |
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