View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_42 (Length: 300)
Name: NF5876_low_42
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 8659545 - 8659829
Alignment:
| Q |
1 |
aagattaattgttctcaaatctcaagagtaatttgatatatttttctatgacaattttgatataattttttgtta--cgaacaaattgaaaattattgaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8659545 |
aagattaattgttctcaaatctcaagagtaatttgatatatttttctatgacaattttgatataattttttgttatacgaacaaattgaaaattattgaa |
8659644 |
T |
|
| Q |
99 |
atataatataaaattgagtggcttgtctttgannnnnnnnnngacgaagaacacaaactaagaaaggagctatggtgtggcttcaaccaatgacgtgtcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8659645 |
atataatataaaattgagtggcttgtctttgattttttttt-gacgaagaacacaaactaagaaaggagctatggtgtggcttcaaccagtgacgtgtcc |
8659743 |
T |
|
| Q |
199 |
ttcctcttcttcatcttgtttcgttagtggctctagtcgctgctccctctcctctgtaaactactttgccccaaaacccagaaaac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8659744 |
ttcctcttcttcatcttgtttcgttagtggctctagtcgctgctccctctcatctgtaaactactttgccccaaaacccagaaaac |
8659829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University