View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_43 (Length: 298)
Name: NF5876_low_43
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 53781659 - 53781930
Alignment:
| Q |
10 |
ataatactatatgcagagtgacatgctggttatttattgaattcaatagtagtctcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttga |
109 |
Q |
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| T |
53781659 |
ataatactatatgcagagtgacatgctggttatttattgaattcaatagtagtctcaccagccaagagtggtgaaggccaaaggaagaacaagtgcttga |
53781758 |
T |
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| Q |
110 |
aatccaattccagaacaaagcaaatgaaaagcagcatagtaagcgtttccttttctacaagcagtgattggaagccaatcatcttgttggtcaaacttgg |
209 |
Q |
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| T |
53781759 |
aatccaattccagaacaaagcaaatgaaaagcagcatagtaagcgtttccttttctacaagcagtgattggaagccaatcatcttgttggtcaaacttgg |
53781858 |
T |
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| Q |
210 |
tgaagtgaccaacttcttcaagaatgttttcaatgactttcttcaatggagtagctaagggagtgttcataa |
281 |
Q |
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| T |
53781859 |
tgaagtgaccaacttcttcaagaatgttttcaatgactttcttcaatggagtagctaagggagtgttcataa |
53781930 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 9244052 - 9244133
Alignment:
| Q |
66 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
147 |
Q |
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| T |
9244052 |
accaaccaagaatagtgaaagcaacaggaagaacaagagcttgaataccaatcccagaacaaagagtatgaaaagcagcata |
9244133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 9257719 - 9257800
Alignment:
| Q |
66 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
147 |
Q |
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| T |
9257719 |
accaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcata |
9257800 |
T |
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