View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_44 (Length: 298)
Name: NF5876_low_44
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_44 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 906475 - 906204
Alignment:
| Q |
17 |
aaaatgtatacacatgacgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcac |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906475 |
aaaatgtatacacatgccgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcac |
906376 |
T |
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| Q |
117 |
catcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatccc |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906375 |
catcactcaattctttaattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatccc |
906276 |
T |
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| Q |
217 |
actttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttg |
288 |
Q |
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| T |
906275 |
actttcatcatcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttg |
906204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 37 - 288
Target Start/End: Original strand, 894188 - 894439
Alignment:
| Q |
37 |
tcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgatt |
136 |
Q |
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| T |
894188 |
tcaaaagttttgcaatctcgatgctaaagaagagagtgccttcttagatgaaccattttcacttgttgcaacagcagcaccaacactcaattccttaatt |
894287 |
T |
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| Q |
137 |
ctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttg |
236 |
Q |
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| T |
894288 |
ctcttttgtatttccaagctttcatcaccttccatgattctctttacacagttggcaacttcttctcttttcactatcccactttcatcatcaatctttg |
894387 |
T |
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| Q |
237 |
gcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttg |
288 |
Q |
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| T |
894388 |
gcctcacagccaccttgagctcatctgtcaataatttggcattcatcctttg |
894439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 1717 - 1480
Alignment:
| Q |
53 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
152 |
Q |
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| T |
1717 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
1618 |
T |
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| Q |
153 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccacttt |
252 |
Q |
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| T |
1617 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttt |
1518 |
T |
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| Q |
253 |
gagcacatctgtcaataatctcgcattcatcctttgct |
290 |
Q |
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| T |
1517 |
tagcacatcagtgagtaattttgcattcattctttgct |
1480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 33257599 - 33257362
Alignment:
| Q |
53 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
152 |
Q |
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|||||||||| || |||||||||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || | |
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| T |
33257599 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
33257500 |
T |
|
| Q |
153 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccacttt |
252 |
Q |
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| T |
33257499 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttt |
33257400 |
T |
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| Q |
253 |
gagcacatctgtcaataatctcgcattcatcctttgct |
290 |
Q |
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| T |
33257399 |
tagcacatcagtgagtaattttgcattcattctttgct |
33257362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 290
Target Start/End: Original strand, 8294162 - 8294393
Alignment:
| Q |
59 |
gctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagcttt |
158 |
Q |
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|||| |||||| |||||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||| ||||| || || ||||||| |
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| T |
8294162 |
gctagagaagaaagtgctttcctagaagaaccatgctcacttagcacagtagcagcaccaacactcaattctttgattttctttctaatttcaaagcttt |
8294261 |
T |
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| Q |
159 |
catcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcac |
258 |
Q |
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|||| |||| ||||||||| |||| | ||| |||||||||||| ||| | |||||| ||||||| ||||||||||||||||| ||||||||||| || |
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| T |
8294262 |
catctcctttcatgattctttttatagctttggcaacttcctcttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtac |
8294361 |
T |
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| Q |
259 |
atctgtcaataatctcgcattcatcctttgct |
290 |
Q |
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||| || | |||| | |||||||||||||||| |
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| T |
8294362 |
atcagtgagtaattttgcattcatcctttgct |
8294393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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