View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_49 (Length: 278)
Name: NF5876_low_49
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_49 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 3599603 - 3599460
Alignment:
| Q |
108 |
ttatatctatctctaaatttattttgttttaagctatgaaaagttttatataacatatacaaaatgttacaaaacacaccttgtaggaggtcgagccagt |
207 |
Q |
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| T |
3599603 |
ttatatctatctctaaatttattttgttttaagctatgaaaagttttatataacatatacaaaatgttacaaaacacaccttgtaggaggccgagccagt |
3599504 |
T |
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| Q |
208 |
attaccaagtgttgtaggagtagcaactgctgccattattggaa |
251 |
Q |
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| T |
3599503 |
attaccaagtgttgtagaagtaacaactgctgccattattggaa |
3599460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 14340283 - 14340191
Alignment:
| Q |
16 |
ataggttcagtttttcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
108 |
Q |
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| T |
14340283 |
ataggttcagtttttcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
14340191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 3601413 - 3601321
Alignment:
| Q |
16 |
ataggttcagtttttcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
108 |
Q |
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| T |
3601413 |
ataggttcagtttttcaccattcacttctttttcatgtcacaaaaattgcaaataataaacaaaaatgagaatgcaaatttgatgagaaattt |
3601321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 3576968 - 3576890
Alignment:
| Q |
30 |
tcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaattt |
108 |
Q |
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| T |
3576968 |
tcaccattcacttctttttaatgtcacaaatattgcaaataataaacaaaaaggagaatgcaaatttgatgagaaattt |
3576890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 3568404 - 3568346
Alignment:
| Q |
30 |
tcaccattcacttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaat |
88 |
Q |
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| T |
3568404 |
tcaccattcacgtcttttgcatgtcaaaaagattgcaaataataaacaaaaatgagaat |
3568346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 25020275 - 25020340
Alignment:
| Q |
213 |
caagtgttgtaggagtagcaactgctgccattattggaacacaggtgctaatagtaagagtcaaga |
278 |
Q |
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| T |
25020275 |
caagtgttgtaggagtaagagctgctgccattgttggaacacaggtgctaatagtaacagtcaaga |
25020340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 25020156 - 25020222
Alignment:
| Q |
137 |
taagctatgaaaagttttatataacatatacaaaatgttacaaaacacaccttgtaggaggtcgagccagta |
208 |
Q |
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| T |
25020156 |
taagctatgaaaagttt---ataacatata--aaatgttacaaaacacaccttgtaggaggccgagccagta |
25020222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 1408655 - 1408594
Alignment:
| Q |
41 |
ttctttttcatgtcacaaaaattgcaaataataaaccaaaatgagaatgcaaattttatgagaaa |
105 |
Q |
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| T |
1408655 |
ttctttttcatgtcacaaagattgcaaataataaac---aaagagaatgcaaatatgatgagaaa |
1408594 |
T |
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