View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_50 (Length: 274)
Name: NF5876_low_50
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 39616272 - 39616543
Alignment:
| Q |
1 |
agacatgctaacttcatcacatgggcgacaccgtttcttggtattcgctacttctccttccactgtgttttgtggaatttttcgagtttcttggagaaca |
100 |
Q |
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| T |
39616272 |
agacatgctaacttcatcacatgggcgacaccttttcttggtattcgctacttctccttccactgtgttttgtggaatttttcgagtttcttggagaaca |
39616371 |
T |
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| Q |
101 |
agttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaaagttatgggaaaggt |
200 |
Q |
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| T |
39616372 |
agttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaaagttatgggaaaggt |
39616471 |
T |
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| Q |
201 |
tgagtggcgccgtttttgctttttccatgtatcctttgatcttctccctagtgatagcatatctctgctcct |
272 |
Q |
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| T |
39616472 |
tgagtggcgccgtttttgctttttccatgtatcctttgatcttctccctagtgatagcatatctctgttcct |
39616543 |
T |
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Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 1591107 - 1591280
Alignment:
| Q |
86 |
gtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaa |
185 |
Q |
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| T |
1591107 |
gtttcttggagaacacgttgatagagtttctttatttctgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaa |
1591206 |
T |
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| Q |
186 |
agttatgggaaaggttgagtggcgccgtttttgctttttccatgtatcctttgatcttctccctagtgatagca |
259 |
Q |
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| T |
1591207 |
aattatggtaagggttgaatggcgctgttttcgctatttccatgtattctttaatcttctccttagtcatagca |
1591280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 86 - 272
Target Start/End: Original strand, 19270902 - 19271088
Alignment:
| Q |
86 |
gtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaa |
185 |
Q |
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||||||||||||||| ||||| | ||||||||||||||| |||||||||| || ||||||||| |||||| || ||||||| |||||||||||||||| |
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| T |
19270902 |
gtttcttggagaacacgttgatagagtttctttatttgtgccaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaa |
19271001 |
T |
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| Q |
186 |
agttatgggaaaggttgagtggcgccgtttttgctttttccatgtatcctttgatcttctccctagtgatagcatatctctgctcct |
272 |
Q |
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| T |
19271002 |
aattatggtgagggttgaatggcgctgttttcgctatttccatgtattcgttgatcttctccttagtcatagcaaatttctgttcct |
19271088 |
T |
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