View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_53 (Length: 264)
Name: NF5876_low_53
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 14179405 - 14179164
Alignment:
| Q |
7 |
aattgaagcagcaagagacagctgtaatttgattttataagatgtagccctataaaaatctttatagcaaagctgaaattgtattcatattcattatcta |
106 |
Q |
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| T |
14179405 |
aattgaagcagcaagagacagctgtaatttgattttataagatgtagccctataaaaatctttatagcaaagctgaaattgtattcatattcattattta |
14179306 |
T |
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| Q |
107 |
tctacatatatatatcgttgaaagtgaaatgcataatctccagcacatgctgtctgaaaaacgaattataacatgaaatcatcatatacatatttgtaat |
206 |
Q |
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| T |
14179305 |
tctacataaatatatcgttgaaagtgaaatgcataatctccagcacatgctgtctgaaaaacgaattataacatgaaatcatcatatacatatttgtaat |
14179206 |
T |
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| Q |
207 |
atcagcttgcatcatcatctgaaaaataaactaactgtcctt |
248 |
Q |
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| T |
14179205 |
atcagcttgcatcatcatctgaaaaataaactaactgtcctt |
14179164 |
T |
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