View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_56 (Length: 253)
Name: NF5876_low_56
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_56 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2561806 - 2561555
Alignment:
| Q |
1 |
ctctcctccaccgctctatttgtacccaaactcttgaaccaagtgtaaggattcccatcaaggttaatatcaatcaaacctgcattatgaatagctcatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2561806 |
ctctcctccaccgctctatctgtacccaaactcttgaaccaagtgtaaggatacccatcaaggttaatatcaatcaaacctgcatcatgaatagctcttc |
2561707 |
T |
|
| Q |
101 |
tttagccatttatcaaccagaatggacggactgttctccccttcttttcatgtgcatgaaggatatcgttaaaatctccaaaaatgcaccatgggagaga |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2561706 |
tttagccatttatcaaccaggatggacggactgttctccccttcttttcatgtgcatgaaggatatcgttaaaatctccaaaaatgcaccatggcagaga |
2561607 |
T |
|
| Q |
201 |
agtactatttgctaattgataaatgaaatttcaagaatctctgctcctcctc |
252 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
2561606 |
agtactatttgctaattgacgaatgaaattccaagaatctcttctcctcctc |
2561555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University