View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_59 (Length: 252)

Name: NF5876_low_59
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_59
NF5876_low_59
[»] chr1 (9 HSPs)
chr1 (92-240)||(8659142-8659290)
chr1 (1-43)||(8659339-8659381)
chr1 (100-183)||(42560948-42561031)
chr1 (97-143)||(26542699-26542745)
chr1 (106-143)||(51229286-51229323)
chr1 (97-143)||(21966271-21966317)
chr1 (101-182)||(6012971-6013051)
chr1 (100-132)||(2653382-2653414)
chr1 (98-142)||(52675342-52675386)
[»] chr2 (14 HSPs)
chr2 (98-183)||(23914570-23914655)
chr2 (100-183)||(744899-744982)
chr2 (97-184)||(44821331-44821418)
chr2 (98-142)||(10643632-10643676)
chr2 (100-184)||(35468717-35468801)
chr2 (97-139)||(960606-960649)
chr2 (104-143)||(16573873-16573912)
chr2 (97-144)||(45555147-45555194)
chr2 (104-162)||(11694210-11694268)
chr2 (98-180)||(33201233-33201315)
chr2 (98-183)||(9740596-9740681)
chr2 (98-183)||(23914769-23914854)
chr2 (97-130)||(25527402-25527435)
chr2 (104-132)||(11681636-11681664)
[»] chr8 (12 HSPs)
chr8 (101-177)||(3501385-3501461)
chr8 (104-181)||(1284151-1284228)
chr8 (98-195)||(11420410-11420507)
chr8 (101-143)||(34882319-34882361)
chr8 (98-138)||(2442283-2442323)
chr8 (98-138)||(24314139-24314179)
chr8 (100-132)||(34103478-34103510)
chr8 (104-175)||(4438535-4438606)
chr8 (100-183)||(29005534-29005617)
chr8 (98-129)||(45521540-45521571)
chr8 (109-183)||(16337997-16338071)
chr8 (97-157)||(34151132-34151191)
[»] chr6 (10 HSPs)
chr6 (104-183)||(32279611-32279690)
chr6 (110-177)||(28133479-28133546)
chr6 (98-143)||(8866858-8866903)
chr6 (104-183)||(10129696-10129776)
chr6 (98-132)||(1562647-1562681)
chr6 (97-131)||(14237564-14237598)
chr6 (110-176)||(28116580-28116646)
chr6 (112-177)||(28220350-28220415)
chr6 (97-137)||(6877109-6877149)
chr6 (110-177)||(28219460-28219525)
[»] chr5 (16 HSPs)
chr5 (98-184)||(39850393-39850479)
chr5 (105-184)||(18282264-18282343)
chr5 (100-183)||(29686217-29686300)
chr5 (98-162)||(23085331-23085395)
chr5 (112-183)||(14000849-14000920)
chr5 (104-162)||(14001117-14001175)
chr5 (97-127)||(29663451-29663481)
chr5 (98-132)||(31378207-31378241)
chr5 (97-147)||(35695289-35695339)
chr5 (101-183)||(37516882-37516964)
chr5 (98-127)||(33322267-33322296)
chr5 (98-139)||(35373318-35373359)
chr5 (100-160)||(833878-833938)
chr5 (104-132)||(2334314-2334342)
chr5 (100-132)||(17822386-17822418)
chr5 (106-162)||(29632694-29632750)
[»] scaffold0455 (1 HSPs)
scaffold0455 (110-177)||(11515-11582)
[»] chr7 (13 HSPs)
chr7 (104-183)||(3434015-3434093)
chr7 (101-164)||(38237477-38237540)
chr7 (98-143)||(24650006-24650051)
chr7 (111-184)||(43358742-43358815)
chr7 (98-162)||(7606263-7606327)
chr7 (107-158)||(28069670-28069721)
chr7 (104-183)||(35338347-35338426)
chr7 (97-132)||(36471598-36471633)
chr7 (97-143)||(10039945-10039991)
chr7 (98-132)||(15753630-15753664)
chr7 (104-182)||(32358849-32358927)
chr7 (97-129)||(35791991-35792023)
chr7 (100-184)||(47437795-47437879)
[»] chr4 (11 HSPs)
chr4 (97-143)||(4608669-4608715)
chr4 (97-184)||(3092369-3092456)
chr4 (97-132)||(47723083-47723118)
chr4 (97-183)||(4505794-4505879)
chr4 (101-143)||(4523880-4523922)
chr4 (98-164)||(48458446-48458512)
chr4 (107-184)||(46058392-46058469)
chr4 (104-164)||(20004775-20004835)
chr4 (97-141)||(44689815-44689859)
chr4 (100-132)||(45637838-45637870)
chr4 (100-184)||(48458033-48458117)
[»] chr3 (11 HSPs)
chr3 (111-161)||(28247325-28247375)
chr3 (100-138)||(50585778-50585816)
chr3 (111-182)||(1338122-1338193)
chr3 (104-183)||(2594472-2594551)
chr3 (101-151)||(47409964-47410014)
chr3 (97-138)||(28170641-28170682)
chr3 (105-162)||(36643583-36643640)
chr3 (97-138)||(42618143-42618184)
chr3 (97-138)||(47968346-47968387)
chr3 (97-130)||(51940251-51940284)
chr3 (98-146)||(27371280-27371328)
[»] scaffold0047 (1 HSPs)
scaffold0047 (104-169)||(65530-65595)
[»] scaffold0038 (2 HSPs)
scaffold0038 (112-177)||(20848-20913)
scaffold0038 (110-177)||(19958-20023)
[»] scaffold0009 (1 HSPs)
scaffold0009 (109-184)||(53693-53765)
[»] scaffold0043 (1 HSPs)
scaffold0043 (98-146)||(72141-72189)
[»] scaffold0018 (1 HSPs)
scaffold0018 (98-130)||(36511-36543)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 8659290 - 8659142
Alignment:
Q  92 caattcaccaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaatgcaaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8659290 caattcaccaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaatgcaaaa 8659191  T
Q  192 ttgagagaataaaaaagacagtctaaaatctctataatctttacatatt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8659190 ttgagagaataaaaaagacagtctaaaatctctataatctttacatatt 8659142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8659381 - 8659339
Alignment:
Q  1 tttgttgcactaatccataatctaccatatagattatgatcaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8659381 tttgttgcactaatccataatctaccatatagattatgatcaa 8659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 42560948 - 42561031
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||  ||||||||||||||| | || |||||||||||| ||| ||| | |||||||| | ||||| ||||||||||||    
T  42560948 caacaatattgcaaatataatataaactcttgtcattttcaatgacaccaacaatataacattattatagaaaaatttgtttaa 42561031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 26542745 - 26542699
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  26542745 caccaacaataaaacaaatataatataaaattttatctttttcaatg 26542699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 51229286 - 51229323
Alignment:
Q  106 tataacaaatataatataaatttttatcattttcaatg 143  Q
    |||| |||||||||||||||||||||||||||||||||    
T  51229286 tatagcaaatataatataaatttttatcattttcaatg 51229323  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 21966317 - 21966271
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    |||||||||| |||||||||||||||||||| ||||| |||| ||||    
T  21966317 caccaacaatgtaacaaatataatataaattcttatctttttgaatg 21966271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 6013051 - 6012971
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgttta 182  Q
    |||| |||||||||||||||||||| ||||||| ||||||||| ||  ||| | |||| ||| | ||||| |||||||||||    
T  6013051 aacattataacaaatataatataaa-ttttatctttttcaatgacatcaacaacataatattgttatagaaaaatttgttta 6012971  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 2653414 - 2653382
Alignment:
Q  100 caacaatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||| ||||    
T  2653414 caacaatataacaaatataatataaattcttat 2653382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 52675386 - 52675342
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaat 142  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||||||    
T  52675386 accaacaatataacaaatatgataaaaattcttatctttttcaat 52675342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 23914655 - 23914570
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||  ||| ||| | |||||||| | |||| |||||||||||||    
T  23914655 accaacaatataacaaatataatataaattcttatctttttcaataacacaaacaatataacattcttatagccaaatttgtttaa 23914570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 744899 - 744982
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||| ||||||||||||||||||||||| |||| |||  ||| ||| | |||||||| | |||||||||||| |||||    
T  744899 caacaatatagcaaatataatataaatttttatctttttaaataacaccaacaatataacattcttatagacaaatttatttaa 744982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 44821418 - 44821331
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    |||||||||||||| |||||||| ||||||||||||| |||| | |  ||||||| | ||| |||||| |||| ||||||| ||||||    
T  44821418 caccaacaatataataaatataaaataaatttttatctttttaattaacactaacaatatagcatttttataggcaaatttatttaaa 44821331  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 10643676 - 10643632
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaat 142  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  10643676 accaacaatataataaatataatataaattattatcgttttcaat 10643632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 35468801 - 35468717
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||||||||| |||||||||||||||| ||||  |||| | || ||| ||| |||||||||| | |||| |||||||| |||||    
T  35468801 caacaatataataaatataatataaattcttatattttttattgacaccaacaaaataacattcttatagtcaaatttgcttaaa 35468717  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 960606 - 960649
Alignment:
Q  97 caccaacaatataacaaata-taatataaatttttatcattttc 139  Q
    |||||||||||||||||||| ||||||||||||||||| |||||    
T  960606 caccaacaatataacaaatactaatataaatttttatctttttc 960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 16573912 - 16573873
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatg 143  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  16573912 aatatatcaaatataatataaatttttatcattttgaatg 16573873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 45555194 - 45555147
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatgg 144  Q
    ||||||||||||||||| ||||||||||| ||||||  ||||||||||    
T  45555194 caccaacaatataacaattataatataaaattttatatttttcaatgg 45555147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 11694210 - 11694268
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatt 162  Q
    |||||||||||||||||||||||||||||  |||| |||| ||| ||| ||||| ||||    
T  11694210 aatataacaaatataatataaatttttatatttttgaatgacaccaacaaaatagcatt 11694268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 33201315 - 33201233
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtt 180  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||| ||  ||| ||||| |||| | || ||||||||||||    
T  33201315 accaacaatataacaaatataatacaaattcttatcgttctgaatgacatcaacaaaatagcattcttattgacaaatttgtt 33201233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 9740596 - 9740681
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    ||||| ||| |||||||||||||| ||||| |||||||||| |||  ||||||| | ||| |||||| | | |||| |||||||||    
T  9740596 accaataatgtaacaaatataataaaaattcttatcatttttaataacactaacaatatagcatttttaaaaacaattttgtttaa 9740681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 23914854 - 23914769
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||| |||||||| |||||||||||| ||||  ||||||||   || ||| | |||||||| | |||| |||||||||||||    
T  23914854 accaacaagataacaaacataatataaattcttatatttttcaatattaccaacaatataacattcttataggcaaatttgtttaa 23914769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 25527435 - 25527402
Alignment:
Q  97 caccaacaatataacaaatataatataaattttt 130  Q
    |||| |||||||||||||||||||||||||||||    
T  25527435 caccgacaatataacaaatataatataaattttt 25527402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 11681636 - 11681664
Alignment:
Q  104 aatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||||    
T  11681636 aatataacaaatataatataaatttttat 11681664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 3501385 - 3501461
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||||||||||| || |||||||||| |||| ||| ||| |||||||||||| |||| |||||||    
T  3501385 aacaatataacaaatataatataagttcttatcattttgaatgacaccaacaaaataacatttttatagtcaaattt 3501461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 1284228 - 1284151
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgttt 181  Q
    |||||||||||||||| |||||||| |||| |||| |||| ||||||| |||||||||| | ||||  ||||||||||    
T  1284228 aatataacaaatataacataaatttgtatctttttgaatgacactaacaaaataacattcttatagtgaaatttgttt 1284151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 11420410 - 11420507
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaatgcaaaattga 195  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||   ||| ||| |||||| ||| | |||| ||||||| |||||||| | ||||||    
T  11420410 accaacaatataacaaatataatataaattcttatctttttgaacaacaccaacaaaataatattcttatagtcaaatttatttaaatgtataattga 11420507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 34882361 - 34882319
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  34882361 aacaatataacaaatataatataaattattatcattttgaatg 34882319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 2442323 - 2442283
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcatttt 138  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  2442323 accaataatataacaaatataatataaatttttatcttttt 2442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 24314179 - 24314139
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcatttt 138  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  24314179 accaacaatataacaaatattatataaattttaatcatttt 24314139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 34103510 - 34103478
Alignment:
Q  100 caacaatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||||||||    
T  34103510 caacaatataacaaatataatataaatttttat 34103478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 4438606 - 4438535
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaat 175  Q
    |||||||||||||||||||||||| ||||| |||| ||||  || ||| | |||||||| | ||||||||||    
T  4438606 aatataacaaatataatataaattcttatcttttttaatgataccaacaatataacattcttatagacaaat 4438535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 29005617 - 29005534
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||  ||||||||||||||| ||||||| |||||||||  || ||| | |||||| | | ||||| ||||||||||||    
T  29005617 caacaatattgcaaatataatataaacttttatccttttcaatgataccaacaatataacaatattatagaaaaatttgtttaa 29005534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 129
Target Start/End: Complemental strand, 45521571 - 45521540
Alignment:
Q  98 accaacaatataacaaatataatataaatttt 129  Q
    ||||||||||||||||||||||||||||||||    
T  45521571 accaacaatataacaaatataatataaatttt 45521540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 16338071 - 16337997
Alignment:
Q  109 aacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||| | |||||| |||| |||| ||| ||| | ||| |||| | ||||||||||||||||||    
T  16338071 aacaaatataatataattgtttatctttttaaatgacaccaacaatatatcattcttatagacaaatttgtttaa 16337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 34151191 - 34151132
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaata 157  Q
    |||||||||||||| |||||||||||||||| ||||| |||| |||| ||| ||| |||||    
T  34151191 caccaacaatataa-aaatataatataaattcttatctttttaaatgacaccaacaaaata 34151132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 32279611 - 32279690
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||||||||||| ||||| |||| |||| ||| ||| |||||||||||| || | |||||||| ||||    
T  32279611 aatataacaaatataatataaattcttatcttttttaatgacaccaacaaaataacatttttatggtcaaatttgcttaa 32279690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 28133479 - 28133546
Alignment:
Q  110 acaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||||||||||| ||| ||||| ||  |||||||||||||| | |||| |||||||    
T  28133479 acaaatataatataaatttttatcttttgcaatgacataaactaaataacattcttatagtcaaattt 28133546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 8866858 - 8866903
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  8866858 accaacaatataacaaatataatataaattcttatcttttttaatg 8866903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 10129696 - 10129776
Alignment:
Q  104 aatataacaaatataatataaatttttatca-ttttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||| ||||||||||||||||| |||| | |||| |||| ||||||||| ||| | |||| ||| ||||||||||||||    
T  10129696 aatatatcaaatataatataaattcttataattttttaatgacactaactatatagcctttttatacacaaatttgtttaa 10129776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 1562681 - 1562647
Alignment:
Q  98 accaacaatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  1562681 accaacaatataacaaatataatataaagttttat 1562647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 14237564 - 14237598
Alignment:
Q  97 caccaacaatataacaaatataatataaattttta 131  Q
    ||||||||||||||||| |||||||||||||||||    
T  14237564 caccaacaatataacaattataatataaattttta 14237598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 28116646 - 28116580
Alignment:
Q  110 acaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatt 176  Q
    |||||||||||||||||||||||| ||| || || ||  |||||||||||||| | |||| ||||||    
T  28116646 acaaatataatataaatttttatcttttgcagtgacataaactaaataacattcttatagtcaaatt 28116580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 28220350 - 28220415
Alignment:
Q  112 aaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||| ||||| ||| ||||| ||  |||||||||||||| | |||| |||||||    
T  28220350 aaatataatataaattcttatcttttgcaatgacataaactaaataacattcttatagtcaaattt 28220415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 6877149 - 6877109
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattt 137  Q
    |||||||||||||||||| | ||| ||||||||||||||||    
T  6877149 caccaacaatataacaaaaaaaatctaaatttttatcattt 6877109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 28219525 - 28219460
Alignment:
Q  110 acaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||||| ||||| ||| |||||  || |||||||||||||| | |||| |||||||    
T  28219525 acaaatataatataaattcttatcttttgcaatg--acaaactaaataacattcttatagtcaaattt 28219460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 39850479 - 39850393
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||| ||||||| |||||||||||||||| |||||||||| |||  |  |||| | |||||||| | |||||||||||||||||||    
T  39850479 accaataatataataaatataatataaattcttatcatttttaataactttaacaatataacattattatagacaaatttgtttaaa 39850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 18282264 - 18282343
Alignment:
Q  105 atataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    |||||||||||| |||| ||||||||||| |||| |||| ||| ||| |||||| ||| | |||| ||||||||||||||    
T  18282264 atataacaaatagaatacaaatttttatctttttgaatgacaccaacaaaataatattcttatagtcaaatttgtttaaa 18282343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 29686217 - 29686300
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||||||||||||||| ||||| |||| |||| ||| ||  || ||||||| | ||||  ||||||||||||    
T  29686217 caacaatataacaaatataatataaattcttatctttttgaatgacaccaataaattaacattcttatagtaaaatttgtttaa 29686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 23085331 - 23085395
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatt 162  Q
    |||||||||||||||||||||||||||||| ||||  |||| | || ||| ||| ||||||||||    
T  23085331 accaacaatataacaaatataatataaattcttatttttttaactgacaccaacaaaataacatt 23085395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 14000849 - 14000920
Alignment:
Q  112 aaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||||||||| |||| |||| ||| ||| ||||  |||||  |||| |||||||||||||    
T  14000849 aaatataatataaatttttatcttttttaatgacaccaacaaaattgcatttctatagtcaaatttgtttaa 14000920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 14001117 - 14001175
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatt 162  Q
    |||||||||||||||||||||||| ||||| |||| |||| ||  ||| ||||||||||    
T  14001117 aatataacaaatataatataaattcttatctttttgaatgacatcaacaaaataacatt 14001175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 29663481 - 29663451
Alignment:
Q  97 caccaacaatataacaaatataatataaatt 127  Q
    |||||||||||||||||||||||||||||||    
T  29663481 caccaacaatataacaaatataatataaatt 29663451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 31378241 - 31378207
Alignment:
Q  98 accaacaatataacaaatataatataaatttttat 132  Q
    ||||||||||||||||||||||||| |||||||||    
T  31378241 accaacaatataacaaatataatatcaatttttat 31378207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 35695339 - 35695289
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatggcac 147  Q
    ||||||||||||| || ||||||||||||||| |||| |||| ||||||||    
T  35695339 caccaacaatataccacatataatataaatttatatctttttgaatggcac 35695289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 37516882 - 37516964
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    ||||||||| ||||||||||||||||| ||||  |||| |||| ||| ||||| | ||| |||| ||||| |||||| |||||    
T  37516882 aacaatatatcaaatataatataaattcttatatttttgaatgacaccaactataaaacctttttatagaaaaatttatttaa 37516964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 33322296 - 33322267
Alignment:
Q  98 accaacaatataacaaatataatataaatt 127  Q
    ||||||||||||||||||||||||||||||    
T  33322296 accaacaatataacaaatataatataaatt 33322267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 35373359 - 35373318
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttc 139  Q
    |||||||||||||||||||||||| ||||| ||||| |||||    
T  35373359 accaacaatataacaaatataataaaaattcttatctttttc 35373318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 833938 - 833878
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataaca 160  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||| ||| ||| | ||||||    
T  833938 caacaatataacaaatataatctaaattcttatctttttgaatgacaccaacaatataaca 833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 2334314 - 2334342
Alignment:
Q  104 aatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||||    
T  2334314 aatataacaaatataatataaatttttat 2334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 17822418 - 17822386
Alignment:
Q  100 caacaatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||| ||||    
T  17822418 caacaatataacaaatataatataaattcttat 17822386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 29632750 - 29632694
Alignment:
Q  106 tataacaaatataatataaatttttatcattttcaatggcactaactaaataacatt 162  Q
    ||||||||||| |||||||||| ||||| |||| |||| ||| ||| ||||||||||    
T  29632750 tataacaaataaaatataaattcttatctttttaaatgacaccaacaaaataacatt 29632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 11515 - 11582
Alignment:
Q  110 acaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||||||||||| ||| ||||| ||  |||||||||||||| | |||| |||||||    
T  11515 acaaatataatataaatttttatcttttgcaatgacataaactaaataacattcttatagtcaaattt 11582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 3434093 - 3434015
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||||||||||| |||||| ||| |||| | ||||| |||||||||| | |||| |||||||| ||||    
T  3434093 aatataacaaatataatataaattcttatca-tttgaatgaccctaacaaaataacattcttatagtcaaatttgcttaa 3434015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 38237477 - 38237540
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatttt 164  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||| |||   ||||||||||    
T  38237477 aacaatataacaaatataatataaattcttatctttttcaatgacaccaacagtataacatttt 38237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 24650051 - 24650006
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  24650051 accaacaatataacaaatataatataaattcttatctttttgaatg 24650006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 43358815 - 43358742
Alignment:
Q  111 caaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||||||||||||||| ||||| |||| |||  ||| ||| |||||||||||| |||| ||||||| ||||||    
T  43358815 caaatataatataaattcttatctttttaaattacaccaacaaaataacatttttatagtcaaatttatttaaa 43358742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 7606327 - 7606263
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatt 162  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||| ||  ||| ||||||||||    
T  7606327 accaacaatttaactaatataatataaatttttatctttttgaatgacatcaacaaaataacatt 7606263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 28069670 - 28069721
Alignment:
Q  107 ataacaaatataatataaatttttatcattttcaatggcactaactaaataa 158  Q
    ||||||||||||||||||||| ||||| |||| |||| ||||||| ||||||    
T  28069670 ataacaaatataatataaattcttatctttttgaatgacactaacaaaataa 28069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 35338426 - 35338347
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    ||||||| |||||||||||||||| ||||| |||| |||| ||| ||| | |||||||| | | |||||||| |||||||    
T  35338426 aatataataaatataatataaattcttatcttttttaatgacaccaacaatataacattctaacagacaaatatgtttaa 35338347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 36471598 - 36471633
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttat 132  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36471598 caccaacaatataacaaatataatataaattattat 36471633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 10039945 - 10039991
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    ||||||||||||| ||||||||||||||||| ||||| |||| ||||    
T  10039945 caccaacaatatagcaaatataatataaattattatctttttgaatg 10039991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 15753630 - 15753664
Alignment:
Q  98 accaacaatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  15753630 accaacaatataacaaatataatataaagttttat 15753664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 32358927 - 32358849
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgttta 182  Q
    |||||| ||||||||||||||||| ||||| ||||||||| ||  ||  | |||||||||| |||  ||||||||||||    
T  32358927 aatataccaaatataatataaattcttatctttttcaatgacaacaaaaatataacatttttatatgcaaatttgttta 32358849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 35792023 - 35791991
Alignment:
Q  97 caccaacaatataacaaatataatataaatttt 129  Q
    |||||||||||||||||||||||||| ||||||    
T  35792023 caccaacaatataacaaatataatattaatttt 35791991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 47437795 - 47437879
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||||||||| |||||||||||||||| ||||| |||| |||  ||| ||| |||| | ||| | |||| ||||| ||||||||    
T  47437795 caacaatataaaaaatataatataaattcttatcttttttaataacaccaacaaaatcaaattcttatagtcaaatatgtttaaa 47437879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 4608669 - 4608715
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  4608669 caccaacaatataacaaatataatataaattcttatctttttgaatg 4608715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 3092456 - 3092369
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||||||||||  |||||| ||| |||||||||||| |||| |||  ||  ||| | ||||||||||||||| |||||||| |||||    
T  3092456 caccaacaatattgcaaatacaatctaaatttttatcttttttaattacatcaacaatataacattttcataggcaaatttgcttaaa 3092369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 47723118 - 47723083
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttat 132  Q
    |||||||||| |||||||||||||||||||||||||    
T  47723118 caccaacaatgtaacaaatataatataaatttttat 47723083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 4505879 - 4505794
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||| |||||||||||||||| ||||| |||| |||| ||| ||| |||||  ||| | |||| ||||| |||||||    
T  4505879 caccaacaatataa-aaatataatataaattcttatctttttgaatgacaccaacaaaataggattattatagtcaaatatgtttaa 4505794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 4523880 - 4523922
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatg 143  Q
    ||||||||||||||||||| |||||||||| || |||||||||    
T  4523880 aacaatataacaaatataacataaatttttttctttttcaatg 4523922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 48458512 - 48458446
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatttt 164  Q
    ||||| |||||||||||||||||||||||| ||||  |||| || | ||| ||| ||||||||||||    
T  48458512 accaataatataacaaatataatataaattcttatttttttgaacgacaccaacaaaataacatttt 48458446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 46058469 - 46058392
Alignment:
Q  107 ataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||||||||||||||||| ||||||  |||| |||||||| ||| |  || |||||| |||  ||||||||||||||    
T  46058469 ataacaaatataatataaacttttatatttttgaatggcaccaacaatgtatcatttttatatgcaaatttgtttaaa 46058392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 20004775 - 20004835
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacatttt 164  Q
    |||||||||||||||||||||||| ||||  |||| |||| ||| ||| ||||| ||||||    
T  20004775 aatataacaaatataatataaattcttatattttttaatgacaccaacaaaatagcatttt 20004835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 44689859 - 44689815
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcattttcaa 141  Q
    ||||||| ||||||||||||||||||||||| ||||  |||||||    
T  44689859 caccaacgatataacaaatataatataaattattatttttttcaa 44689815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 45637838 - 45637870
Alignment:
Q  100 caacaatataacaaatataatataaatttttat 132  Q
    |||||||||||||||||||||||||||| ||||    
T  45637838 caacaatataacaaatataatataaattcttat 45637870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 48458117 - 48458033
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    |||||||||||||||||||||||||| | ||||| |||| |||  ||| ||| ||||| |||| | |||| ||| ||| ||||||    
T  48458117 caacaatataacaaatataatataaagtcttatcttttttaataacacaaacaaaatagcattcttatagtcaagtttttttaaa 48458033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 28247375 - 28247325
Alignment:
Q  111 caaatataatataaatttttatcattttcaatggcactaactaaataacat 161  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| |||||||    
T  28247375 caaatataatataaatttttatcattttcaatgacatcaactatataacat 28247325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 50585816 - 50585778
Alignment:
Q  100 caacaatataacaaatataatataaatttttatcatttt 138  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  50585816 caacaatataacaaatataatataaatttttatcttttt 50585778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 1338193 - 1338122
Alignment:
Q  111 caaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgttta 182  Q
    |||||||| |||||| | ||||||||||||||| ||| ||| | |||||||||| ||| | |||||||||||    
T  1338193 caaatatagtataaactcttatcattttcaatgacaccaacaatataacatttttatacaaaaatttgttta 1338122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 2594551 - 2594472
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaa 183  Q
    |||||||||||||||||||||||| ||||| |||| |||| ||| | | |||||||||| | || | |||||||| ||||    
T  2594551 aatataacaaatataatataaattcttatctttttgaatgacaccagcaaaataacattgttatggtcaaatttgattaa 2594472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 47409964 - 47410014
Alignment:
Q  101 aacaatataacaaatataatataaatttttatcattttcaatggcactaac 151  Q
    ||||||||| ||||||||||||||| ||||||| || |||||| |||||||    
T  47409964 aacaatatagcaaatataatataaacttttatctttatcaatgacactaac 47410014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 28170682 - 28170641
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcatttt 138  Q
    |||||||||| |||||||||||||||||||| ||||| ||||    
T  28170682 caccaacaatgtaacaaatataatataaattcttatcttttt 28170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 36643583 - 36643640
Alignment:
Q  105 atataacaaatataatataaatttttatcattttcaatggcactaactaaataacatt 162  Q
    ||||||||||||||||||||||| ||||| |||| ||||  || ||| ||||||||||    
T  36643583 atataacaaatataatataaattcttatcgttttgaatgataccaacaaaataacatt 36643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 42618184 - 42618143
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcatttt 138  Q
    |||||||||| |||||||||||||||||||| ||||| ||||    
T  42618184 caccaacaatgtaacaaatataatataaattcttatcttttt 42618143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 47968387 - 47968346
Alignment:
Q  97 caccaacaatataacaaatataatataaatttttatcatttt 138  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||    
T  47968387 caccaacaatataacaaatgtaatataaattcttatcttttt 47968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 51940284 - 51940251
Alignment:
Q  97 caccaacaatataacaaatataatataaattttt 130  Q
    |||||| |||||||||||||||||||||||||||    
T  51940284 caccaataatataacaaatataatataaattttt 51940251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 27371280 - 27371328
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggca 146  Q
    ||||||||||||||||||||||||| ||  ||||||  |||||||||||    
T  27371280 accaacaatataacaaatataatatcaaaatttatctctttcaatggca 27371328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 65595 - 65530
Alignment:
Q  104 aatataacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatag 169  Q
    |||||||||||||||||||||||| ||||| |||| ||||  || ||| |||||| ||||| ||||    
T  65595 aatataacaaatataatataaattcttatctttttgaatgataccaacaaaataatatttttatag 65530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 20848 - 20913
Alignment:
Q  112 aaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||| ||||| ||| ||||| ||  |||||||||||||| | |||| |||||||    
T  20848 aaatataatataaattcttatcttttgcaatgacataaactaaataacattcttatagtcaaattt 20913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 20023 - 19958
Alignment:
Q  110 acaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaattt 177  Q
    |||||||||||||||||| ||||| ||| |||||  || |||||||||||||| | |||| |||||||    
T  20023 acaaatataatataaattcttatcttttgcaatg--acaaactaaataacattcttatagtcaaattt 19958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 53765 - 53693
Alignment:
Q  109 aacaaatataatataaatttttatcattttcaatggcactaactaaataacattttcatagacaaatttgtttaaa 184  Q
    ||||||||||||||||||||||||| |||| |||| |   ||| | |||||||| | ||||| |||||||||||||    
T  53765 aacaaatataatataaatttttatcttttttaatgac---aacaatataacattattatagaaaaatttgtttaaa 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 72189 - 72141
Alignment:
Q  98 accaacaatataacaaatataatataaatttttatcattttcaatggca 146  Q
    ||||| ||||||||||||||||||| || |||||||  |||||||||||    
T  72189 accaataatataacaaatataatatcaaattttatctctttcaatggca 72141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 36511 - 36543
Alignment:
Q  98 accaacaatataacaaatataatataaattttt 130  Q
    ||||||||||||||||||||||||||| |||||    
T  36511 accaacaatataacaaatataatataatttttt 36543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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