View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_6 (Length: 596)
Name: NF5876_low_6
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 27 - 578
Target Start/End: Original strand, 27668113 - 27668674
Alignment:
| Q |
27 |
gacttttaatacaaggagtcgatcacctttaatcaaccattgaatgttctaccactatgagatcataattggatcccatagaatcatcacattc------ |
120 |
Q |
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| T |
27668113 |
gactttttatacaaggagtcgatcacctttagtcaaccattgaatgttctaccactatgagatcatgattggatcccatagaatcatcacattagaccaa |
27668212 |
T |
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| Q |
121 |
-----ttactcaaagtagattaaacaccatattcttactcaaagttgtaagacattagatatatgagttatctcacttatatgatgtgcaacattcatat |
215 |
Q |
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|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27668213 |
gagaattcacccaagtagattaaacaccatattcttactcaaagttttaagacattagatatatgagttatctcacttatatgatgtgcaacattcatat |
27668312 |
T |
|
| Q |
216 |
tttcatttaatgtgagacttctggcttacacttgatacaccaataatcttctcctcaagtgtgagttcatttattcattatttgggttgtcactttcttt |
315 |
Q |
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| T |
27668313 |
tttcattcaatgtgagacttctg-cttacacttgatacaccaataatcttctcctcaagtgtgagttcatttattcattatttgggttgtcactttcttt |
27668411 |
T |
|
| Q |
316 |
ttaactcactttaattaattccattgaatataatttnnnnnnnnntcttgattatgaaagaatcattaatgattttgcaaccataaatttaagaagaaca |
415 |
Q |
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| T |
27668412 |
ttaactcactttaattaattccattgaatataatttaaaaaaaaatcttgattatgaaagaatcattaatgattttgcaaccataaatgtaagaagaaca |
27668511 |
T |
|
| Q |
416 |
acatgtgtataattaaaagggcactattggttcatccaatgcaccaaaaatcaaagatttggccatggtatgaggaatgagttattgcacgtttgtagct |
515 |
Q |
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| T |
27668512 |
acatttgtataattaaaagggcactattggttcatccattgcaccaaaaatcaaagatttggccatggtatgaggaatgagttattgcacgtttgtagct |
27668611 |
T |
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| Q |
516 |
actaagagtcgttgcttatcacatcatgtatatgtccatgaaggggaaacaatgggtctaaat |
578 |
Q |
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| T |
27668612 |
actaagagtcgttgcttatcacatcatgtagatgtccatgaagggggaacaatgggtctaaat |
27668674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 39785656 - 39785692
Alignment:
| Q |
186 |
tctcacttatatgatgtgcaacattcatattttcatt |
222 |
Q |
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| T |
39785656 |
tctcacttatatgttgtgcaacattcattttttcatt |
39785692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 31603589 - 31603555
Alignment:
| Q |
361 |
tcttgattatgaaagaatcattaatgattttgcaa |
395 |
Q |
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| T |
31603589 |
tcttgattatgaaagaatcattaatgattttgcaa |
31603555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 24482053 - 24482019
Alignment:
| Q |
163 |
taagacattagatatatgagttatctcacttatat |
197 |
Q |
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| T |
24482053 |
taagacattagatatatgagtcatctcacttatat |
24482019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 3395430 - 3395465
Alignment:
| Q |
163 |
taagacattagatatatgagttatctcacttatatg |
198 |
Q |
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| T |
3395430 |
taagacattagatatatgagtcatctcacttatatg |
3395465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 396
Target Start/End: Original strand, 4552861 - 4552891
Alignment:
| Q |
366 |
attatgaaagaatcattaatgattttgcaac |
396 |
Q |
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| T |
4552861 |
attatgaaagaatcattaatgattttgcaac |
4552891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 13333012 - 13333045
Alignment:
| Q |
204 |
caacattcatattttcatttaatgtgagacttct |
237 |
Q |
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| T |
13333012 |
caacattcacattttcatttaatgtgagacttct |
13333045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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