View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_61 (Length: 251)
Name: NF5876_low_61
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 41198794 - 41199007
Alignment:
| Q |
28 |
cttgaacatgtttgtgtatcagtagtacattgtttttcttacggaaaatgttagtagctagaatttgaaccctaaacctcattctgaaactcccaagggt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198794 |
cttgaacatgtttgtgtatcagtagtacattgtttttcttacggaaaatgttagtagctagaatttgaaccctaaacctcattctgaaactcccaagggt |
41198893 |
T |
|
| Q |
128 |
atcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgtatgttaagtgtctttggagattgaagcttttttcatggtt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198894 |
atcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgtatgttaagtgtctttggagattgaagcttttttcatggtt |
41198993 |
T |
|
| Q |
228 |
gttatttgtctgtg |
241 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41198994 |
gttatttgtctgtg |
41199007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 41208842 - 41208928
Alignment:
| Q |
102 |
aacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgta |
188 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||| |||||||| ||||| | || ||||| |||| ||||||||||||||||||| |
|
|
| T |
41208842 |
aacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattagggaccacatagtacattgttgatggtgta |
41208928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University