View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_62 (Length: 251)
Name: NF5876_low_62
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31495581 - 31495822
Alignment:
| Q |
1 |
tatatatactagtatatagttttatatttcgatgaaatgccaactagttactatgcaaattgaatgaaatcctcaacttgagcacctgggattttgcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31495581 |
tatatatactagtatatagttttatatttcgatgaaatgccaactagttactatgcaaattgaatgaaatcctcaacttgagcacctgggattttgcttg |
31495680 |
T |
|
| Q |
101 |
tctttgagttgattgataaatgcaaagttaggattgattggcacatttttcactctagattttgtacgtagttttagcaattaaagtttacaaatgttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31495681 |
tctttgagttgattgataaatgcaaagttaggattgattggcacatttttcactctagattttgtacgtagttttagcaattaaagtttacaaatgttgg |
31495780 |
T |
|
| Q |
201 |
tacatatacaaggatgtatatattcaaaatcttgacctatgc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31495781 |
tacatatacaaggatgtatatattcaaaatcttgacctatgc |
31495822 |
T |
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