View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_63 (Length: 251)

Name: NF5876_low_63
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_63
NF5876_low_63
[»] chr5 (35 HSPs)
chr5 (144-241)||(16883747-16883844)
chr5 (143-187)||(3398218-3398262)
chr5 (143-187)||(18841841-18841885)
chr5 (143-186)||(24014823-24014866)
chr5 (143-186)||(29856005-29856048)
chr5 (143-184)||(3738011-3738052)
chr5 (147-188)||(26376709-26376750)
chr5 (152-201)||(2795508-2795557)
chr5 (143-188)||(11250092-11250137)
chr5 (151-188)||(11636729-11636766)
chr5 (143-188)||(30328462-30328507)
chr5 (152-188)||(14466634-14466670)
chr5 (152-188)||(30839779-30839815)
chr5 (152-188)||(31366096-31366132)
chr5 (152-188)||(36597577-36597613)
chr5 (143-187)||(40166250-40166294)
chr5 (1-43)||(2795664-2795706)
chr5 (4-42)||(32019982-32020020)
chr5 (143-185)||(33072677-33072719)
chr5 (143-185)||(39043150-39043192)
chr5 (152-186)||(40512951-40512985)
chr5 (6-43)||(3398361-3398398)
chr5 (6-43)||(4047553-4047590)
chr5 (151-188)||(5958267-5958304)
chr5 (143-184)||(11692767-11692808)
chr5 (1-38)||(16883595-16883632)
chr5 (151-188)||(18150376-18150413)
chr5 (143-183)||(8103715-8103755)
chr5 (3-43)||(12641990-12642030)
chr5 (151-187)||(15241236-15241272)
chr5 (143-187)||(16160889-16160933)
chr5 (143-187)||(26265182-26265226)
chr5 (6-42)||(30839923-30839959)
chr5 (6-34)||(34333183-34333211)
chr5 (6-42)||(36597721-36597757)
[»] chr8 (57 HSPs)
chr8 (143-188)||(38843701-38843746)
chr8 (143-187)||(45005968-45006012)
chr8 (143-193)||(38213081-38213131)
chr8 (143-187)||(9580245-9580289)
chr8 (143-186)||(7750667-7750710)
chr8 (143-185)||(26682068-26682110)
chr8 (143-188)||(36967206-36967251)
chr8 (143-187)||(11117133-11117177)
chr8 (151-187)||(12131981-12132017)
chr8 (143-187)||(12189724-12189768)
chr8 (143-187)||(12434152-12434196)
chr8 (152-187)||(31812111-31812146)
chr8 (143-186)||(34869658-34869701)
chr8 (145-187)||(11923013-11923055)
chr8 (1-43)||(40225982-40226024)
chr8 (152-197)||(2161376-2161421)
chr8 (143-184)||(5911983-5912024)
chr8 (148-185)||(11977281-11977318)
chr8 (151-188)||(14816269-14816306)
chr8 (151-188)||(14829434-14829471)
chr8 (147-184)||(23840237-23840274)
chr8 (143-184)||(33430249-33430290)
chr8 (2-43)||(38212940-38212981)
chr8 (152-188)||(3306199-3306235)
chr8 (143-187)||(8284705-8284749)
chr8 (151-187)||(13496876-13496912)
chr8 (6-42)||(26834703-26834739)
chr8 (143-187)||(32186184-32186228)
chr8 (143-187)||(38527819-38527863)
chr8 (143-187)||(43717688-43717732)
chr8 (152-187)||(7140603-7140638)
chr8 (152-187)||(10129102-10129137)
chr8 (147-185)||(12346006-12346044)
chr8 (151-185)||(35678418-35678452)
chr8 (143-185)||(37523758-37523800)
chr8 (1-42)||(2161529-2161570)
chr8 (6-43)||(7140459-7140496)
chr8 (6-43)||(10129244-10129281)
chr8 (143-184)||(11947035-11947076)
chr8 (6-43)||(13496709-13496746)
chr8 (6-43)||(18567416-18567453)
chr8 (6-43)||(22838366-22838403)
chr8 (6-43)||(27874681-27874718)
chr8 (6-43)||(28014858-28014895)
chr8 (6-43)||(31812254-31812291)
chr8 (6-42)||(3306055-3306091)
chr8 (7-43)||(13327942-13327978)
chr8 (152-188)||(13328085-13328121)
chr8 (152-188)||(19343981-19344017)
chr8 (6-42)||(26682210-26682246)
chr8 (156-188)||(26834558-26834590)
chr8 (7-43)||(28866932-28866968)
chr8 (6-34)||(29642753-29642781)
chr8 (152-188)||(33514645-33514681)
chr8 (152-184)||(39701947-39701979)
chr8 (152-188)||(40210965-40211001)
chr8 (152-188)||(40716272-40716308)
[»] chr7 (37 HSPs)
chr7 (143-188)||(4969770-4969815)
chr7 (143-188)||(29398250-29398295)
chr7 (143-187)||(29692676-29692720)
chr7 (143-187)||(45501457-45501501)
chr7 (143-180)||(39475853-39475890)
chr7 (143-184)||(47457597-47457638)
chr7 (143-185)||(19868114-19868156)
chr7 (143-188)||(19889338-19889383)
chr7 (143-183)||(820673-820713)
chr7 (152-188)||(9331959-9331995)
chr7 (152-188)||(24250311-24250347)
chr7 (152-188)||(33342986-33343022)
chr7 (152-188)||(34270263-34270299)
chr7 (150-185)||(2444049-2444084)
chr7 (4-43)||(45501600-45501639)
chr7 (152-187)||(46290009-46290044)
chr7 (1-43)||(3561873-3561915)
chr7 (150-188)||(24857497-24857535)
chr7 (5-43)||(25709398-25709436)
chr7 (143-185)||(26300573-26300615)
chr7 (1-43)||(39757105-39757147)
chr7 (153-187)||(47120339-47120373)
chr7 (6-43)||(820541-820578)
chr7 (6-43)||(4969914-4969951)
chr7 (143-188)||(5909417-5909462)
chr7 (143-188)||(7170000-7170045)
chr7 (6-43)||(9332102-9332139)
chr7 (146-187)||(27696705-27696746)
chr7 (152-185)||(39757254-39757287)
chr7 (151-188)||(39869120-39869157)
chr7 (152-184)||(3562022-3562054)
chr7 (152-188)||(32117812-32117848)
chr7 (6-42)||(32117956-32117992)
chr7 (6-42)||(33343130-33343166)
chr7 (6-42)||(34270403-34270439)
chr7 (152-184)||(36548604-36548636)
chr7 (6-42)||(46290152-46290188)
[»] chr6 (29 HSPs)
chr6 (143-188)||(24979285-24979330)
chr6 (143-187)||(34692352-34692396)
chr6 (143-188)||(30623323-30623368)
chr6 (152-188)||(18332833-18332869)
chr6 (143-186)||(1814917-1814960)
chr6 (143-184)||(4371840-4371881)
chr6 (143-188)||(6016853-6016898)
chr6 (143-188)||(17596310-17596355)
chr6 (151-188)||(29863446-29863483)
chr6 (151-188)||(31791060-31791097)
chr6 (152-188)||(14228270-14228306)
chr6 (152-188)||(17552731-17552767)
chr6 (152-188)||(33017722-33017758)
chr6 (152-187)||(8977611-8977646)
chr6 (152-183)||(10887031-10887062)
chr6 (4-43)||(10887170-10887209)
chr6 (152-187)||(28943913-28943948)
chr6 (152-186)||(5363037-5363071)
chr6 (1-43)||(34692495-34692537)
chr6 (153-186)||(2086999-2087032)
chr6 (6-43)||(29863302-29863339)
chr6 (6-42)||(3853085-3853121)
chr6 (151-187)||(10345683-10345719)
chr6 (151-187)||(12220548-12220584)
chr6 (6-42)||(14228126-14228162)
chr6 (6-42)||(17552587-17552623)
chr6 (152-188)||(26602575-26602611)
chr6 (6-42)||(28943769-28943805)
chr6 (152-188)||(31568110-31568146)
[»] chr4 (46 HSPs)
chr4 (143-188)||(45742365-45742410)
chr4 (143-187)||(17409822-17409866)
chr4 (143-187)||(23545474-23545518)
chr4 (143-186)||(19468193-19468236)
chr4 (143-188)||(19451036-19451081)
chr4 (143-188)||(27019257-27019302)
chr4 (147-187)||(3085350-3085390)
chr4 (143-188)||(8736946-8736991)
chr4 (143-188)||(16667520-16667565)
chr4 (143-184)||(19838825-19838866)
chr4 (152-188)||(54495782-54495818)
chr4 (1-43)||(4779431-4779473)
chr4 (143-185)||(6875501-6875543)
chr4 (147-185)||(24243029-24243067)
chr4 (1-43)||(47326887-47326929)
chr4 (1-43)||(47341683-47341725)
chr4 (6-43)||(3085811-3085848)
chr4 (143-188)||(9971700-9971745)
chr4 (147-188)||(31955898-31955939)
chr4 (143-188)||(47327028-47327073)
chr4 (143-188)||(47341824-47341869)
chr4 (143-184)||(51691343-51691384)
chr4 (143-187)||(2096869-2096913)
chr4 (143-187)||(24684834-24684878)
chr4 (151-187)||(40049557-40049593)
chr4 (143-187)||(48910970-48911014)
chr4 (152-188)||(50352300-50352336)
chr4 (146-188)||(3726934-3726976)
chr4 (152-186)||(9759286-9759320)
chr4 (150-184)||(16069348-16069382)
chr4 (1-43)||(35999942-35999984)
chr4 (1-31)||(46803952-46803982)
chr4 (6-39)||(4329739-4329772)
chr4 (143-188)||(7349686-7349731)
chr4 (6-43)||(18882267-18882304)
chr4 (6-39)||(27019405-27019438)
chr4 (6-43)||(27362532-27362569)
chr4 (6-43)||(29190816-29190853)
chr4 (143-184)||(33632338-33632379)
chr4 (143-184)||(53376549-53376590)
chr4 (6-43)||(54495637-54495674)
chr4 (7-43)||(16667385-16667421)
chr4 (152-184)||(23553571-23553603)
chr4 (7-43)||(48910803-48910839)
chr4 (152-188)||(49228354-49228390)
chr4 (152-188)||(49332330-49332366)
[»] chr3 (42 HSPs)
chr3 (143-188)||(50204400-50204445)
chr3 (143-187)||(42180050-42180094)
chr3 (143-185)||(54527842-54527884)
chr3 (143-188)||(8165643-8165688)
chr3 (137-186)||(24086983-24087032)
chr3 (143-188)||(51567954-51567999)
chr3 (143-187)||(51618048-51618092)
chr3 (143-186)||(27549537-27549580)
chr3 (150-188)||(51400165-51400203)
chr3 (143-178)||(8497559-8497594)
chr3 (152-187)||(38389445-38389480)
chr3 (146-188)||(26499567-26499609)
chr3 (1-43)||(33474468-33474510)
chr3 (143-188)||(11610912-11610957)
chr3 (147-188)||(40930054-40930095)
chr3 (152-188)||(3863327-3863363)
chr3 (152-187)||(2571267-2571302)
chr3 (152-187)||(12515618-12515653)
chr3 (146-185)||(15664992-15665031)
chr3 (151-186)||(39365275-39365310)
chr3 (143-185)||(35415157-35415199)
chr3 (150-188)||(36426554-36426592)
chr3 (5-43)||(40930192-40930230)
chr3 (143-176)||(2379205-2379238)
chr3 (6-43)||(3863470-3863507)
chr3 (152-185)||(20938057-20938090)
chr3 (2-31)||(20938210-20938239)
chr3 (6-43)||(23523087-23523124)
chr3 (143-188)||(37444144-37444189)
chr3 (6-43)||(38389588-38389625)
chr3 (143-188)||(47386919-47386964)
chr3 (6-43)||(50204544-50204581)
chr3 (6-43)||(51618188-51618225)
chr3 (6-42)||(2571410-2571446)
chr3 (7-43)||(8165787-8165823)
chr3 (6-42)||(10307908-10307944)
chr3 (152-188)||(13495291-13495327)
chr3 (147-188)||(28992917-28992960)
chr3 (3-43)||(35414806-35414846)
chr3 (143-187)||(46845576-46845620)
chr3 (152-184)||(51339328-51339360)
chr3 (7-39)||(54016169-54016201)
[»] chr1 (44 HSPs)
chr1 (143-188)||(3168204-3168249)
chr1 (143-187)||(6180184-6180228)
chr1 (143-187)||(7824994-7825038)
chr1 (143-188)||(13321873-13321918)
chr1 (143-188)||(23591695-23591740)
chr1 (143-187)||(22167333-22167377)
chr1 (143-187)||(35512723-35512767)
chr1 (150-187)||(22331621-22331658)
chr1 (143-184)||(25186840-25186881)
chr1 (143-188)||(38812737-38812782)
chr1 (143-187)||(30171877-30171921)
chr1 (143-187)||(30187418-30187462)
chr1 (152-188)||(34801965-34802001)
chr1 (145-187)||(23808433-23808475)
chr1 (142-188)||(25532206-25532252)
chr1 (6-43)||(13322017-13322054)
chr1 (146-187)||(34050422-34050463)
chr1 (143-188)||(39150462-39150507)
chr1 (152-188)||(1502864-1502900)
chr1 (2-42)||(23591840-23591880)
chr1 (143-183)||(41624832-41624872)
chr1 (152-188)||(51382369-51382405)
chr1 (152-187)||(313748-313783)
chr1 (137-187)||(399552-399602)
chr1 (1-43)||(38812881-38812923)
chr1 (152-186)||(44918024-44918058)
chr1 (6-43)||(313890-313927)
chr1 (6-43)||(6180327-6180364)
chr1 (151-188)||(6307500-6307537)
chr1 (6-43)||(6569985-6570022)
chr1 (143-188)||(6754469-6754514)
chr1 (143-188)||(17919451-17919496)
chr1 (6-43)||(25465299-25465336)
chr1 (6-43)||(30172020-30172057)
chr1 (6-43)||(30187561-30187598)
chr1 (143-184)||(31737669-31737710)
chr1 (6-43)||(34802108-34802145)
chr1 (6-43)||(35512866-35512903)
chr1 (6-43)||(41624970-41625007)
chr1 (2-31)||(51920427-51920456)
chr1 (6-42)||(1502720-1502756)
chr1 (7-43)||(5875216-5875252)
chr1 (6-42)||(23576414-23576450)
chr1 (152-184)||(32716307-32716339)
[»] chr2 (43 HSPs)
chr2 (143-187)||(26003627-26003671)
chr2 (143-184)||(7720116-7720157)
chr2 (143-188)||(16754968-16755013)
chr2 (147-188)||(43806357-43806398)
chr2 (143-188)||(36612867-36612912)
chr2 (143-188)||(36620718-36620763)
chr2 (143-187)||(38148337-38148381)
chr2 (4-43)||(23932706-23932745)
chr2 (1-43)||(5853458-5853500)
chr2 (1-43)||(16493527-16493569)
chr2 (1-43)||(22704678-22704720)
chr2 (147-188)||(29981364-29981405)
chr2 (2-43)||(45062339-45062380)
chr2 (152-188)||(12016664-12016700)
chr2 (151-187)||(15411766-15411802)
chr2 (152-188)||(16126703-16126739)
chr2 (152-188)||(19228423-19228459)
chr2 (151-187)||(23932563-23932599)
chr2 (152-188)||(26229997-26230033)
chr2 (143-187)||(27665179-27665223)
chr2 (151-187)||(35729114-35729150)
chr2 (152-187)||(5583702-5583737)
chr2 (143-182)||(8064842-8064881)
chr2 (152-187)||(10690781-10690816)
chr2 (4-43)||(11660892-11660931)
chr2 (152-187)||(16919298-16919333)
chr2 (152-187)||(22705453-22705488)
chr2 (152-187)||(39904192-39904227)
chr2 (1-43)||(15231972-15232014)
chr2 (6-43)||(6109530-6109567)
chr2 (6-43)||(8065264-8065301)
chr2 (6-43)||(12016807-12016844)
chr2 (151-184)||(12919495-12919528)
chr2 (6-43)||(16126559-16126596)
chr2 (151-188)||(29795055-29795092)
chr2 (6-43)||(43388481-43388518)
chr2 (143-188)||(43388902-43388947)
chr2 (6-42)||(4576326-4576362)
chr2 (143-187)||(14377423-14377467)
chr2 (151-187)||(20566161-20566197)
chr2 (6-42)||(24729577-24729613)
chr2 (6-42)||(29157829-29157865)
chr2 (6-42)||(38248420-38248456)
[»] scaffold0129 (1 HSPs)
scaffold0129 (143-187)||(13794-13838)
[»] scaffold0036 (2 HSPs)
scaffold0036 (2-43)||(94014-94055)
scaffold0036 (143-184)||(94154-94195)
[»] scaffold0028 (1 HSPs)
scaffold0028 (143-188)||(31836-31881)
[»] scaffold0111 (2 HSPs)
scaffold0111 (152-187)||(37259-37294)
scaffold0111 (6-43)||(37114-37151)
[»] scaffold0061 (2 HSPs)
scaffold0061 (152-188)||(52923-52959)
scaffold0061 (6-43)||(52779-52816)
[»] scaffold0017 (2 HSPs)
scaffold0017 (152-188)||(145675-145711)
scaffold0017 (6-43)||(145818-145855)
[»] scaffold0631 (1 HSPs)
scaffold0631 (143-184)||(443-484)
[»] scaffold0011 (2 HSPs)
scaffold0011 (6-43)||(13226-13263)
scaffold0011 (152-188)||(13083-13119)
[»] scaffold0009 (1 HSPs)
scaffold0009 (152-185)||(193377-193410)
[»] scaffold0007 (1 HSPs)
scaffold0007 (5-34)||(2447-2476)
[»] scaffold0727 (1 HSPs)
scaffold0727 (152-184)||(5692-5724)
[»] scaffold0305 (1 HSPs)
scaffold0305 (157-185)||(17951-17979)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 16883747 - 16883844
Alignment:
Q  144 tagttgttttaacatgtgcaatgttgcacatgttagacaaaccctgctaatataacatatctgcaacttgtacttgcagacatcctttacagtctctg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16883747 tagttgttttaacatgtgcaatgttgcacatgttagacaaaccctactaatataacttatctgcaacttgtacttgcagacatcctttacagtctctg 16883844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 3398262 - 3398218
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3398262 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 3398218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 18841841 - 18841885
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18841841 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 18841885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 24014823 - 24014866
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24014823 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 24014866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 29856005 - 29856048
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  29856005 ttagttgttttaacatgtgcaatgttgcacatgttagagaaacc 29856048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 3738011 - 3738052
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  3738011 ttagttgttttaacatgtgcaatgttgcacatattagacaaa 3738052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 26376709 - 26376750
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  26376709 ttgttttaacatgtacaatgttgcacatgttagacaaaccct 26376750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 2795557 - 2795508
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccctgctaatataacat 201  Q
    |||||||||||||| ||||||||||||||||||||||  |||||| ||||    
T  2795557 ttaacatgtgcaatattgcacatgttagacaaacccttttaatattacat 2795508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 11250092 - 11250137
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||    
T  11250092 ttagttgctttaacatgtgcaatattgcacatgttaaacaaaccct 11250137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 11636766 - 11636729
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  11636766 tttaacatgtgcaatattgcacatgttagacaaaccct 11636729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 30328462 - 30328507
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||    
T  30328462 ttagttatcttaacatgtgcaatattgcacatgttagacaaaccct 30328507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 14466634 - 14466670
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14466634 ttaacatgtgcaatattgcacatgttagacaaaccct 14466670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 30839815 - 30839779
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30839815 ttaacatgtgcaatattgcacatgttagacaaaccct 30839779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 31366096 - 31366132
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31366096 ttaacatgtgcaatattgcacatgttagacaaaccct 31366132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 36597613 - 36597577
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  36597613 ttaacatgtgcaatattgcacatgttagacaaaccct 36597577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 40166294 - 40166250
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  40166294 ttagttgttttaacatgtgcaatactccacatgttagacaaaccc 40166250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2795706 - 2795664
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  2795706 tatgggtttttctatcatgtgcaaatttgcacatgttaagaag 2795664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 32019982 - 32020020
Alignment:
Q  4 gagtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||||| || |||||||    
T  32019982 gagtttttctatcatgtgcaaatttgcacatgttaagaa 32020020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 33072719 - 33072677
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||    
T  33072719 ttagttgatttaacatgtgcaatattgcacatgttaaacaaac 33072677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 39043192 - 39043150
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||    
T  39043192 ttagttgttttaacatatgcaatggtgcacatgttagataaac 39043150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 40512985 - 40512951
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||||||||||||| ||||||||||||||||||||    
T  40512985 ttaacatgtgcaatattgcacatgttagacaaacc 40512951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 3398398 - 3398361
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  3398398 gtttttctatcatgtgcaaatttgcacatgttaagaag 3398361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 4047590 - 4047553
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  4047590 gtttttctatcatgtgcaaatttgcacatgttaagaag 4047553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 5958267 - 5958304
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  5958267 tttaacatgtgtaatattgcacatgttagacaaaccct 5958304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 11692767 - 11692808
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||| |||||||||||||||| ||| ||||||||||||||    
T  11692767 ttagttattttaacatgtgcaatattgtacatgttagacaaa 11692808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16883595 - 16883632
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatatttta 38  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  16883595 tatgagtttttctatcatgtacaaatttgcacatttta 16883632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 18150413 - 18150376
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  18150413 tttaacatatgcaatattgcacatgttagacaaaccct 18150376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 8103715 - 8103755
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaa 183  Q
    |||||||  |||||||||||||| |||||||||||||||||    
T  8103715 ttagttgccttaacatgtgcaatattgcacatgttagacaa 8103755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 12641990 - 12642030
Alignment:
Q  3 tgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||| ||||||||||||||| || ||||||||    
T  12641990 tgagtttttctataatgtgcaaatttgcacatgttaagaag 12642030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 15241236 - 15241272
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  15241236 tttaacatgtgcaatattgcatatgttagacaaaccc 15241272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 16160933 - 16160889
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||    
T  16160933 ttagttgttttaacatgtgcaatattacacatgttttacaaaccc 16160889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 26265182 - 26265226
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||| | |||||||  |||||||||||||||||    
T  26265182 ttagttgttttaacatatacaatgttaaacatgttagacaaaccc 26265226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 30839959 - 30839923
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  30839959 gtttttctatcatgtgcaaatttgcacatgttaagaa 30839923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 34333183 - 34333211
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatat 34  Q
    |||||||||||||||||||||||||||||    
T  34333183 gtttttctatcatgtgcaaatttgcatat 34333211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36597757 - 36597721
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  36597757 gtttttctatcatgtgcaaatttgcacatgttaagaa 36597721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 57)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 38843746 - 38843701
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38843746 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 38843701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 45006012 - 45005968
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45006012 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 45005968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 38213081 - 38213131
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccctgctaa 193  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  38213081 ttagttgttttaacatgtgcaatgttgcacatgttaaacaaacccttctaa 38213131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 9580245 - 9580289
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  9580245 ttagttgttttaacatgtgcaatgttgcacatattagacaaaccc 9580289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 7750710 - 7750667
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  7750710 ttagttgttttaacatgtgcaatattgcacatgttagacaaacc 7750667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 26682110 - 26682068
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26682110 ttagttgttttaacatgtgcaatattgcacatgttagacaaac 26682068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 36967206 - 36967251
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||    
T  36967206 ttagttgtcttaacatgtacaatgttgcacatgttagacaaaccct 36967251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 11117133 - 11117177
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  11117133 ttagttgctttaacatgtgcaatattgcacatgttagacaaaccc 11117177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 12132017 - 12131981
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||    
T  12132017 tttaacatgtgcaatgttgcacatgttagacaaaccc 12131981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 12189724 - 12189768
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  12189724 ttagttgttttaacatgtgcaatgctgcacatgttaaacaaaccc 12189768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 12434152 - 12434196
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  12434152 ttagttgttttaacatgtgcaatgctgcacatgttaaacaaaccc 12434196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 31812146 - 31812111
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  31812146 ttaacatgtgcaatgttgcacatgttagacaaaccc 31812111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 34869658 - 34869701
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  34869658 ttagttgttttaacacgtgcaatgttgcacatgtttgacaaacc 34869701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 11923055 - 11923013
Alignment:
Q  145 agttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  11923055 agttgttttaacttgtgcaatattgcacatgttagacaaaccc 11923013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40225982 - 40226024
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  40225982 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 40226024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 2161421 - 2161376
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccctgctaatata 197  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||    
T  2161421 ttaacatgtgcaatattgcacatgttagacaaacccttttaatata 2161376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 5911983 - 5912024
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  5911983 ttagttgttttaatatgagcaatgttgcacatgttagacaaa 5912024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 11977281 - 11977318
Alignment:
Q  148 tgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||| |||||||||||||||||||||||    
T  11977281 tgttttaacatgtgtaatgttgcacatgttagacaaac 11977318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 14816269 - 14816306
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  14816269 tttaacatgtgcaatattgcacatgttagacaaaccct 14816306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 14829471 - 14829434
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  14829471 tttaacatgtgcaatattgcacatgttagacaaaccct 14829434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 23840274 - 23840237
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||||| |||||||||||||||||||||    
T  23840274 ttgttttaacatgtgccatgttgcacatgttagacaaa 23840237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 33430249 - 33430290
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  33430249 ttagttgttttaatatgtgcaatgttgaacatgttagacaaa 33430290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 38212940 - 38212981
Alignment:
Q  2 atgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  38212940 atgagtttttctatcatgtgcaaatttgcacatgttaagaag 38212981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 3306199 - 3306235
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3306199 ttaacatgtgcaatattgcacatgttagacaaaccct 3306235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 8284705 - 8284749
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||    
T  8284705 ttagttgctttaacatgtgcaatactgcacatgttagacaaaccc 8284749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 13496876 - 13496912
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||||||||    
T  13496876 tttaacatgtgcaatattgcacatgttagacaaaccc 13496912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26834739 - 26834703
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26834739 gtttttctatcatgtgcaaatttgcatatattaagaa 26834703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 32186228 - 32186184
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||    
T  32186228 ttagttgttttaacatttgcaatgttgctcatgttaaacaaaccc 32186184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 38527863 - 38527819
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||  |||||||||||||| |||||||||||||||||||||    
T  38527863 ttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 38527819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 43717688 - 43717732
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||    
T  43717688 ttagttgctttaacatgtgcaacattgcacatgttagacaaaccc 43717732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 7140603 - 7140638
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  7140603 ttaacatgtgcaatattgcacatgttagacaaaccc 7140638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 10129137 - 10129102
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  10129137 ttaacatgtgcaatattgcacatgttagacaaaccc 10129102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 12346044 - 12346006
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  12346044 ttgttttaacatgtgtaatgttgcacatgtcagacaaac 12346006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 35678418 - 35678452
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||||||||||| |||||||||||||||||||    
T  35678418 tttaacatgtgcaatattgcacatgttagacaaac 35678452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 37523800 - 37523758
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||| |||||||||||||||||| ||| |||||||||||||||    
T  37523800 ttagctgttttaacatgtgcaatattgtacatgttagacaaac 37523758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2161570 - 2161529
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||| |||||||||||||||||||||||||| || |||||||    
T  2161570 tatgggtttttctatcatgtgcaaatttgcacatgttaagaa 2161529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7140459 - 7140496
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  7140459 gtttttctatcatgtgcaaatttgcacatattaagaag 7140496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 10129281 - 10129244
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  10129281 gtttttctatcatgtgcaaatttgcacatgttaagaag 10129244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 11947035 - 11947076
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| |||||||| ||| ||||||||||||||    
T  11947035 ttagttgttttaacttgtgcaatattgtacatgttagacaaa 11947076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13496709 - 13496746
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  13496709 gtttttctatcatgtgcaaatttgcacatgttaagaag 13496746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 18567416 - 18567453
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  18567416 gtttttctatcatgtgcaaatttgcacatgttaagaag 18567453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 22838403 - 22838366
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  22838403 gtttttctatcatgtgcaaatttgcacatgttaagaag 22838366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 27874681 - 27874718
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  27874681 gtttttctatcatgtgcaaatttgcacatgttaagaag 27874718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 28014858 - 28014895
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  28014858 gtttttctatcatgtgcaaatttgcacatgttaagaag 28014895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31812291 - 31812254
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  31812291 gtttttctatcatgtgcaaatttgcacatattaagaag 31812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 3306055 - 3306091
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  3306055 gtttttctatcatgtgcaaatttgcacatgttaagaa 3306091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 13327942 - 13327978
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||| || ||||||||    
T  13327942 tttttctatcatgtgcaaatttgcacatgttaagaag 13327978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 13328085 - 13328121
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  13328085 ttaacatatgcaatattgcacatgttagacaaaccct 13328121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 19343981 - 19344017
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| |||||||||| |||||||||||    
T  19343981 ttaacatgtgcaatattgcacatgtaagacaaaccct 19344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26682246 - 26682210
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  26682246 gtttttctatcatgtgcaaatttgcacatgttaagaa 26682210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 26834590 - 26834558
Alignment:
Q  156 catgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||| ||||||||||||||||    
T  26834590 catgtgcaatgttgcatatgttagacaaaccct 26834558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 28866932 - 28866968
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  28866932 tttttctatcatgtgcaaatttgtatatattaagaag 28866968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 29642781 - 29642753
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatat 34  Q
    |||||||||||||||||||||||||||||    
T  29642781 gtttttctatcatgtgcaaatttgcatat 29642753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 33514645 - 33514681
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33514645 ttaacatgtgcaatattgcacatgttaggcaaaccct 33514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 39701947 - 39701979
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  39701947 ttaacatgtgcaatattgcacatgttagacaaa 39701979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 40210965 - 40211001
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  40210965 ttaacatatgcaatattgcacatgttagacaaaccct 40211001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 40716308 - 40716272
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| |||||||||||||| |||||||    
T  40716308 ttaacatgtgcaatattgcacatgttagataaaccct 40716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 4969815 - 4969770
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4969815 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 4969770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 29398250 - 29398295
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29398250 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 29398295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 29692676 - 29692720
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  29692676 ttagttgttttaacatgtgcaatgatgcacatgttagacaaaccc 29692720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 45501501 - 45501457
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  45501501 ttagttattttaacatgtgcaatgttgcacatgttagacaaaccc 45501457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 39475890 - 39475853
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttaga 180  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39475890 ttagttgttttaacatgtgcaatgttgcacatgttaga 39475853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 47457597 - 47457638
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  47457597 ttagttgttttaacatgtgcaatattgcacatgttagacaaa 47457638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 19868156 - 19868114
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  19868156 ttagttgtcttaacatgtgcaatattgcacatgttagacaaac 19868114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 19889383 - 19889338
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||    
T  19889383 ttagttgccttaacatgtgcaatattgcacatgttagacaaaccct 19889338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 820673 - 820713
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaa 183  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  820673 ttagttgttttaacatgagtaatgttgcacatgttagacaa 820713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 9331995 - 9331959
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9331995 ttaacatgtgcaatattgcacatgttagacaaaccct 9331959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 24250347 - 24250311
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24250347 ttaacatgtgcaatattgcacatgttagacaaaccct 24250311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 33343022 - 33342986
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33343022 ttaacatgtgcaatattgcacatgttagacaaaccct 33342986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 34270299 - 34270263
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34270299 ttaacatgtgcaatattgcacatgttagacaaaccct 34270263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 2444049 - 2444084
Alignment:
Q  150 ttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2444049 ttttaacatatgcaatgttgcacatgttagacaaac 2444084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 45501639 - 45501600
Alignment:
Q  4 gagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  45501639 gagtttttctatcatgtgcaaatttgcacatcttaagaag 45501600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 46290044 - 46290009
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  46290044 ttaacatgtgcaattttgcacatgttagacaaaccc 46290009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3561873 - 3561915
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  3561873 tatgggtttttctatcatgtgcaaatttgcacatgttaagaag 3561915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 24857535 - 24857497
Alignment:
Q  150 ttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  24857535 ttttatcatgtgcaatattgcacatgttagacaaaccct 24857497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 25709398 - 25709436
Alignment:
Q  5 agtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  25709398 agtttttctatcatgtgcaaatttgcacatgttaagaag 25709436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 26300615 - 26300573
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||||| |||||| || ||||||||||||||||    
T  26300615 ttagttgttttaacatatgcaatattacacatgttagacaaac 26300573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39757105 - 39757147
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  39757105 tatgggtttttctatcatgtgcaaatttgcacatgttaagaag 39757147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 47120339 - 47120373
Alignment:
Q  153 taacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||| |||||||||||||||||||||    
T  47120339 taacatgtgcaatattgcacatgttagacaaaccc 47120373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 820541 - 820578
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  820541 gtttttctatcatgtgcaaatttgcacatgttaagaag 820578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 4969951 - 4969914
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  4969951 gtttttctatcatgtgcaaatttgcacatgttaagaag 4969914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 5909417 - 5909462
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||| ||||||||    
T  5909417 ttagttgccttaacatgtgcaatattgcacatgttagtcaaaccct 5909462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 7170045 - 7170000
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||||||| ||||    
T  7170045 ttagttgccttaacatgtgcaatattgcacatgttagacaatccct 7170000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 9332139 - 9332102
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  9332139 gtttttctatcatgtgcaaatttgcacatgttaagaag 9332102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 27696746 - 27696705
Alignment:
Q  146 gttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||| ||||||||||||||| || ||||||||||||||||||    
T  27696746 gttgctttaacatgtgcaatattccacatgttagacaaaccc 27696705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 39757254 - 39757287
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||| |||||||||||||||||||    
T  39757254 ttaacatgtgcaatattgcacatgttagacaaac 39757287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 39869157 - 39869120
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  39869157 tttaacatgtgcaatattgcatatgttagacaaaccct 39869120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 3562022 - 3562054
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  3562022 ttaacatgtgcaatattgcacatgttagacaaa 3562054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 32117848 - 32117812
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| |||||||||||||| |||||||    
T  32117848 ttaacatgtgcaatattgcacatgttagataaaccct 32117812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 32117992 - 32117956
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  32117992 gtttttctatcatgtgcaaatttgcacatgttaagaa 32117956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 33343166 - 33343130
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  33343166 gtttttctatcatgtgcaaatttgcacatgttaagaa 33343130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 34270439 - 34270403
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  34270439 gtttttctatcatgtgcaaatttgcacatgttaagaa 34270403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 36548604 - 36548636
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  36548604 ttaacatgtgcaatattgcacatgttagacaaa 36548636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 46290188 - 46290152
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  46290188 gtttttctatcatgtgcaaatttgcacatgttaagaa 46290152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 24979285 - 24979330
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24979285 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 24979330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 34692396 - 34692352
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34692396 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 34692352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 30623368 - 30623323
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30623368 ttagttgttttaacatgtgtaatgttgcacatgttagacaaaccct 30623323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 18332833 - 18332869
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||||||||||||||||||||||    
T  18332833 ttaacatgtgcaatgttgcacatgttagacaaaccct 18332869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 1814917 - 1814960
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  1814917 ttagttgctttaacatgtgcaatattgcacatgttagacaaacc 1814960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4371881 - 4371840
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  4371881 ttagttgttttaacatgtacaatgttgcacatattagacaaa 4371840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 6016898 - 6016853
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||    
T  6016898 ttagatgtcttaccatgtgcaatgttgcacatgttagacaaaccct 6016853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 17596355 - 17596310
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||    
T  17596355 ttagttgtcttaacatgtgcaatattgcacatgttagacaatccct 17596310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 29863446 - 29863483
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  29863446 tttaacatgtgcaatattgcacatgttagacaaaccct 29863483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 31791060 - 31791097
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  31791060 tttaacatgtgcaatattgcacatgttagacaaaccct 31791097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 14228270 - 14228306
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14228270 ttaacatgtgcaatattgcacatgttagacaaaccct 14228306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 17552731 - 17552767
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17552731 ttaacatgtgcaatattgcacatgttagacaaaccct 17552767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 33017758 - 33017722
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33017758 ttaacatgtgcaatattgcacatgttagacaaaccct 33017722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 8977611 - 8977646
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  8977611 ttaacatgtgcaatattgcacatgttagacaaaccc 8977646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 183
Target Start/End: Complemental strand, 10887062 - 10887031
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaa 183  Q
    ||||||||||||||||||||||||||||||||    
T  10887062 ttaacatgtgcaatgttgcacatgttagacaa 10887031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 10887209 - 10887170
Alignment:
Q  4 gagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  10887209 gagtttttctatcatgtgcaaatttgcacatgttaagaag 10887170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 28943913 - 28943948
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  28943913 ttaacatgtgcaatattgcacatgttagacaaaccc 28943948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 5363037 - 5363071
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||||||||||||| ||||||||||||||||||||    
T  5363037 ttaacatgtgcaatattgcacatgttagacaaacc 5363071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34692537 - 34692495
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  34692537 tatgggtttttctatcatgtgcaaatttgcacatgttaagaag 34692495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 2086999 - 2087032
Alignment:
Q  153 taacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||||||||| ||||||||||||||||||||    
T  2086999 taacatgtgcaatattgcacatgttagacaaacc 2087032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 29863302 - 29863339
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  29863302 gtttttctatcatgtgcaaatttgcacatgttaagaag 29863339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3853121 - 3853085
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  3853121 gtttttctatcatgtgcaaatttgcacatgttaagaa 3853085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 10345683 - 10345719
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  10345683 tttaacatgtgcaatattgcacatgttagacagaccc 10345719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 12220584 - 12220548
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  12220584 tttaacatgtgcaatgttgcaaatgctagacaaaccc 12220548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 14228126 - 14228162
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  14228126 gtttttctatcatgtgcaaatttgcacatgttaagaa 14228162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 17552587 - 17552623
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  17552587 gtttttctatcatgtgcaaatttgcacatgttaagaa 17552623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 26602575 - 26602611
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  26602575 ttaatatgtgcaatattgcacatgttagacaaaccct 26602611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 28943769 - 28943805
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  28943769 gtttttctatcatgtgcaaatttgcacatgttaagaa 28943805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 31568146 - 31568110
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| |||||| |||||||||||||||    
T  31568146 ttaacatgtgcaatattgcacgtgttagacaaaccct 31568110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 45742410 - 45742365
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45742410 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 45742365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 17409866 - 17409822
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17409866 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 17409822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 23545518 - 23545474
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23545518 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 23545474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 19468236 - 19468193
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19468236 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 19468193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 19451036 - 19451081
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  19451036 ttagttgttttaacatgtgcaatgttgcacatgttagacaacccct 19451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 27019302 - 27019257
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  27019302 ttagttgttttaacatgtgcaatgttgcacacgttagacaaaccct 27019257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 3085390 - 3085350
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3085390 ttgttttaacatgtgcaatgttgcacatgttagacaaaccc 3085350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 8736946 - 8736991
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  8736946 ttagatgtcttaacatgtgcaatgttgcacatgttagacaaaccct 8736991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 16667520 - 16667565
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  16667520 ttagatgtcttaacatgtgcaatgttgcacatgttagacaaaccct 16667565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 19838825 - 19838866
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  19838825 ttagttgttttaacatgtgcaatgttccacatgttagacaaa 19838866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 54495782 - 54495818
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||||||||||||||||||||||    
T  54495782 ttaacatgtgcaatgttgcacatgttagacaaaccct 54495818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4779431 - 4779473
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  4779431 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 4779473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 6875543 - 6875501
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  6875543 ttagttgttttaacatgtgcaatattgcaaatgttagacaaac 6875501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 24243029 - 24243067
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  24243029 ttgttttaacatgtgtaatgttgcacatgttagacaaac 24243067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47326887 - 47326929
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  47326887 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 47326929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47341683 - 47341725
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  47341683 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 47341725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 3085848 - 3085811
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| |||||||||||    
T  3085848 gtttttctatcatgtgcaaatttgcacattttaagaag 3085811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 9971700 - 9971745
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||    
T  9971700 ttagttgctgtaacatgtgcaatattgcacatgttagacaaaccct 9971745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 31955898 - 31955939
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  31955898 ttgttttaacatgttcaatgttggacatgttagacaaaccct 31955939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 47327028 - 47327073
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||    
T  47327028 ttagatgtcttaacatgtgcaatgttgcacaggttagacaaaccct 47327073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 47341824 - 47341869
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||    
T  47341824 ttagatgtcttaacatgtgcaatgttgcacaggttagacaaaccct 47341869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 51691384 - 51691343
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  51691384 ttagttgctttaacatgtgcaatgttgcacattttagacaaa 51691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 2096913 - 2096869
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||    
T  2096913 ttagttgatttaacttgtgcaatattgcacatgttagacaaaccc 2096869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 24684878 - 24684834
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||    
T  24684878 ttagttgttttaacatgtgtaatgttgcaaatgttaaacaaaccc 24684834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 40049593 - 40049557
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40049593 tttaacatgtgcaatattgcacatgttagacaaaccc 40049557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 48910970 - 48911014
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||| | |||||||||||||| |||||||||||||||||||||    
T  48910970 ttagttatcttaacatgtgcaatattgcacatgttagacaaaccc 48911014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 50352336 - 50352300
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50352336 ttaacatgtgcaatattgcacatgttagacaaaccct 50352300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 3726976 - 3726934
Alignment:
Q  146 gttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||| |||||||||||||| |||||||||| |||||||||||    
T  3726976 gttgtgttaacatgtgcaatattgcacatgtaagacaaaccct 3726934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 9759286 - 9759320
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||||||||||||| ||||||||||||||||||||    
T  9759286 ttaacatgtgcaatattgcacatgttagacaaacc 9759320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 16069348 - 16069382
Alignment:
Q  150 ttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||| |||||||||||||||||||||||||||    
T  16069348 ttttaacgtgtgcaatgttgcacatgttagacaaa 16069382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35999942 - 35999984
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  35999942 tatgggtttttctatcatgtgcaaatttgcacatgttaagaag 35999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 46803982 - 46803952
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgca 31  Q
    |||||||||||||||||||||||||||||||    
T  46803982 tatgagtttttctatcatgtgcaaatttgca 46803952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 4329772 - 4329739
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaa 39  Q
    ||||||||||||||||||||||||||||| ||||    
T  4329772 gtttttctatcatgtgcaaatttgcatatgttaa 4329739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 7349731 - 7349686
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| |||||| |||||||||||||||    
T  7349731 ttagttgccttaacatgtgcaatattgcacgtgttagacaaaccct 7349686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 18882267 - 18882304
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  18882267 gtttttctatcatgtgcaaatttgcacatgttaagaag 18882304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 27019438 - 27019405
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaa 39  Q
    ||||||||||||||||||||||||||||| ||||    
T  27019438 gtttttctatcatgtgcaaatttgcatatgttaa 27019405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 27362569 - 27362532
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  27362569 gtttttctatcatgtgcaaatttgcacatgttaagaag 27362532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 29190816 - 29190853
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  29190816 gtttttctatcatgtgcaaatttgcacatgttaagaag 29190853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 33632338 - 33632379
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  33632338 ttagttgtttttacatgtataatgttgcacatgttagacaaa 33632379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 53376549 - 53376590
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||| |||||||||||||||| |||||||| |||||||||    
T  53376549 ttagttcttttaacatgtgcaatattgcacatcttagacaaa 53376590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 54495637 - 54495674
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  54495637 gtttttctatcatgtgcaaatttgcacatgttaagaag 54495674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 16667385 - 16667421
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||| || ||||||||    
T  16667385 tttttctatcatgtgcaaatttgcacatgttaagaag 16667421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 23553603 - 23553571
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  23553603 ttaacatgtgcaatattgcacatgttagacaaa 23553571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 48910803 - 48910839
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  48910803 tttttctatcatatgcaaatttgcatatgttaagaag 48910839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 49228390 - 49228354
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  49228390 ttaacatatgcaatattgcacatgttagacaaaccct 49228354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 49332366 - 49332330
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  49332366 ttaacatgtgaaatattgcacatgttagacaaaccct 49332330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 50204445 - 50204400
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50204445 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 50204400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 42180094 - 42180050
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42180094 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 42180050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 54527842 - 54527884
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54527842 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 54527884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 8165688 - 8165643
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  8165688 ttagttgttttaaaatgtgcaatgttgcacatgttagacaaaccct 8165643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 24087032 - 24086983
Alignment:
Q  137 ctacggttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  24087032 ctactgttagttgttttaagatgtgcaatgttgcacatgttagacaaacc 24086983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 51567954 - 51567999
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  51567954 ttagttgttttaacatgtgcaatgttgcgcatgttagacaaaccct 51567999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 51618092 - 51618048
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  51618092 ttagttgttttaacatgtgcaatattgcacatgttagacaaaccc 51618048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 27549580 - 27549537
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  27549580 ttagttgttttaacatgtgcaatgttgcacatattagacaaacc 27549537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 51400203 - 51400165
Alignment:
Q  150 ttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51400203 ttttaacatgtgcaatgttgcacatgttagacaaaccct 51400165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 8497559 - 8497594
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgtta 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  8497559 ttagttgttttaacatgtgcaatgttgcacatgtta 8497594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 38389480 - 38389445
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  38389480 ttaacatgtgcaatgttgcacatgttagacaaaccc 38389445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 26499609 - 26499567
Alignment:
Q  146 gttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  26499609 gttgttttaacatatgcaatgttgcacatgttagataaaccct 26499567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33474468 - 33474510
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  33474468 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 33474510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 11610957 - 11610912
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||    
T  11610957 ttagttgccttaacatgtgcaatattgcacatgttagacaaaccct 11610912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 40930095 - 40930054
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  40930095 ttgttttaacatgtgcaattttgcgcatgttagacaaaccct 40930054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 3863363 - 3863327
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3863363 ttaacatgtgcaatattgcacatgttagacaaaccct 3863327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 2571302 - 2571267
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  2571302 ttaacatgtgcaatattgcacatgttagacaaaccc 2571267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 12515618 - 12515653
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  12515618 ttaacatgtgcaatattgcacatgttagacaaaccc 12515653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 15664992 - 15665031
Alignment:
Q  146 gttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  15664992 gttgttttaacacgtgctatgttgcacatgttagacaaac 15665031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 39365275 - 39365310
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    ||||||||||||||| ||||||||||||||||||||    
T  39365275 tttaacatgtgcaatattgcacatgttagacaaacc 39365310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 35415157 - 35415199
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||||||||||||  ||||||||||||| ||||    
T  35415157 ttagttgttttaacatgtgcaataatgcacatgttagataaac 35415199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 36426554 - 36426592
Alignment:
Q  150 ttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  36426554 ttttaacatgtgcaatgttgcacatgatagaaaaaccct 36426592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 40930230 - 40930192
Alignment:
Q  5 agtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  40930230 agtttttctatcatgtgcaaatttgcacatgttaagaag 40930192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 2379205 - 2379238
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgt 176  Q
    ||||||||||||||||||||||| ||||||||||    
T  2379205 ttagttgttttaacatgtgcaatattgcacatgt 2379238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 3863507 - 3863470
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  3863507 gtttttctatcatgtgcaaatttgcacatgttaagaag 3863470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 20938090 - 20938057
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||| |||||||||||||||||||    
T  20938090 ttaacatgtgcaatattgcacatgttagacaaac 20938057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 20938239 - 20938210
Alignment:
Q  2 atgagtttttctatcatgtgcaaatttgca 31  Q
    ||||||||||||||||||||||||||||||    
T  20938239 atgagtttttctatcatgtgcaaatttgca 20938210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 23523124 - 23523087
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  23523124 gtttttctatcatgtgcaaatttgcacatgttaagaag 23523087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 37444189 - 37444144
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||||||| ||||    
T  37444189 ttagttgccttaacatgtgcaatattgcacatgttagacaatccct 37444144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 38389625 - 38389588
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  38389625 gtttttctatcatgtgcaaatttgcacatgttaagaag 38389588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 47386964 - 47386919
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  47386964 ttagttgctttaatatgcgcaatattgcacatgttagacaaaccct 47386919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 50204581 - 50204544
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  50204581 gtttttctatcatgtgcaaatttgcacatgttaagaag 50204544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 51618225 - 51618188
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  51618225 gtttttctatcatgtgcaaatttgcacatgttaagaag 51618188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 2571446 - 2571410
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  2571446 gtttttctatcatgtgcaaatttgcacatgttaagaa 2571410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 8165823 - 8165787
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||| || ||||||||    
T  8165823 tttttctatcatgtgcaaatttgcacatgttaagaag 8165787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 10307944 - 10307908
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  10307944 gtttttctatcatgtgcaaatttgcacatgttaagaa 10307908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 13495327 - 13495291
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||  ||||||||||||||||||||||    
T  13495327 ttaacatgtgcaaatttgcacatgttagacaaaccct 13495291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 28992917 - 28992960
Alignment:
Q  147 ttgttttaacatgtgcaatgt--tgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||| |  |||||||||||||||||||||    
T  28992917 ttgttttaacatgtgcaatatattgcacatgttagacaaaccct 28992960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 35414806 - 35414846
Alignment:
Q  3 tgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  35414806 tgagtttttctatcatgtgcaaatttacacatgttaagaag 35414846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 46845576 - 46845620
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||| ||||| ||||||||| |||||||| ||||||||||||    
T  46845576 ttagttgctttaagatgtgcaatattgcacatattagacaaaccc 46845620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 51339328 - 51339360
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  51339328 ttaacatgtgcaatattgcacatgttagacaaa 51339360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 54016169 - 54016201
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaa 39  Q
    ||||||||||||||||||||||||| |||||||    
T  54016169 tttttctatcatgtgcaaatttgcacattttaa 54016201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 3168204 - 3168249
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3168204 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 3168249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 6180228 - 6180184
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6180228 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 6180184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 7824994 - 7825038
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7824994 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 7825038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 13321918 - 13321873
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  13321918 ttagttgttttaacatgtacaatgttgcacatgttagacaaaccct 13321873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 23591740 - 23591695
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  23591740 ttagttgctttaacatgtgcaatgttgcacatgttagacaaaccct 23591695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22167377 - 22167333
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  22167377 ttagttgttttaacatgtgcaatgttgcacatggtagacaaaccc 22167333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 35512767 - 35512723
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  35512767 ttagttgttttaacatttgcaatgttgcacatgttagacaaaccc 35512723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 22331658 - 22331621
Alignment:
Q  150 ttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22331658 ttttaacatgtgcaatgttgcacatgttagacaaaccc 22331621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 25186881 - 25186840
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  25186881 ttagttgttttaacatgtgcaatgttgcacatattagacaaa 25186840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 38812782 - 38812737
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  38812782 ttagttgttttaacatgtacaatgttgcacatgttaaacaaaccct 38812737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 30171921 - 30171877
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  30171921 ttagatgtcttaacatgtgcaatgttgcacatgttagacaaaccc 30171877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 30187462 - 30187418
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  30187462 ttagatgtcttaacatgtgcaatgttgcacatgttagacaaaccc 30187418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 34802001 - 34801965
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||||||||||||||||||||||||    
T  34802001 ttaacatgtgcaatgttgcacatgttagacaaaccct 34801965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 23808475 - 23808433
Alignment:
Q  145 agttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  23808475 agttattttaacatgtgcaatgttgtacatgttagacaaaccc 23808433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 25532252 - 25532206
Alignment:
Q  142 gttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  25532252 gttagttattttaacatgtgcgatgttgaacatgttagacaaaccct 25532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 13322054 - 13322017
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  13322054 gtttttctatcatgtgcaaatttgcatatgttaagaag 13322017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 34050422 - 34050463
Alignment:
Q  146 gttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  34050422 gttgctttaacatgtgcaatattgcacatgttagacaaaccc 34050463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 39150462 - 39150507
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||    
T  39150462 ttagttgccttaacatgtgcaatattgcacatgttagacaaaccct 39150507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 1502864 - 1502900
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1502864 ttaacatgtgcaatattgcacatgttagacaaaccct 1502900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 23591880 - 23591840
Alignment:
Q  2 atgagtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  23591880 atgagtttttctatcatgtgcaaatttgcacatgttaagaa 23591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 41624872 - 41624832
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaa 183  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  41624872 ttagttgctttaacatgtgcaatattgcacatgttagacaa 41624832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 51382405 - 51382369
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  51382405 ttaacatgtgcaatattgcacatgttagacaaaccct 51382369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 313783 - 313748
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  313783 ttaacatgtgcaatattgcacatgttagacaaaccc 313748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 399552 - 399602
Alignment:
Q  137 ctacggttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||| ||||||| | ||||||||||||| |||| ||||||||||||||||    
T  399552 ctacgtttagttgctataacatgtgcaatattgcgcatgttagacaaaccc 399602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38812923 - 38812881
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  38812923 tatgggtttttctatcatgtgcaaatttgcacatgttaagaag 38812881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 44918058 - 44918024
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaacc 186  Q
    |||||||||||||| ||||||||||||||||||||    
T  44918058 ttaacatgtgcaatattgcacatgttagacaaacc 44918024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 313927 - 313890
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  313927 gtttttctatcatgtgcaaatttgcacatgttaagaag 313890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6180364 - 6180327
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6180364 gtttttctatcatgtgcaaatttgcacatgttaagaag 6180327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 6307537 - 6307500
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  6307537 tttaacatatgcaattttgcacatgttagacaaaccct 6307500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 6569985 - 6570022
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6569985 gtttttctatcatgtgcaaatttgcacatgttaagaag 6570022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 6754514 - 6754469
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  |||||||||||||| ||||||||||||||||| ||||    
T  6754514 ttagttgccttaacatgtgcaatattgcacatgttagacaatccct 6754469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 17919496 - 17919451
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||  ||||||||| |||| ||||||||||||||||||||||    
T  17919496 ttagttgccttaacatgtacaatattgcacatgttagacaaaccct 17919451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 25465336 - 25465299
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  25465336 gtttttctatcatgtgcaaatttgcacatgttaagaag 25465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 30172057 - 30172020
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  30172057 gtttttctatcatgtgcaaatttgcacatgttaagaag 30172020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 30187598 - 30187561
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  30187598 gtttttctatcatgtgcaaatttgcacatgttaagaag 30187561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 31737669 - 31737710
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||| |||||||||||| ||||||||| ||||||||||||    
T  31737669 ttagttattttaacatgtgtaatgttgcatatgttagacaaa 31737710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 34802145 - 34802108
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  34802145 gtttttctatcatgtgcaaatttgcacatgttaagaag 34802108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 35512903 - 35512866
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  35512903 gtttttctatcatgtgcaaatttgcacatgttaagaag 35512866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 41625007 - 41624970
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||||||  |||||||    
T  41625007 gtttttctatcatgtgcaaatttgcatatgataagaag 41624970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 51920427 - 51920456
Alignment:
Q  2 atgagtttttctatcatgtgcaaatttgca 31  Q
    ||||||||||||||||||||||||||||||    
T  51920427 atgagtttttctatcatgtgcaaatttgca 51920456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 1502720 - 1502756
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  1502720 gtttttctatcatgtgcaaatttgcacatgttaagaa 1502756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 5875216 - 5875252
Alignment:
Q  7 tttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||| || ||||||||    
T  5875216 tttttctatcatgtgcaaatttgcacatgttaagaag 5875252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 23576414 - 23576450
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  23576414 gtttttctatcatgtgcaaatttgcacatgttaagaa 23576450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 32716307 - 32716339
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  32716307 ttaacatgtgcaatattgcacatgttagacaaa 32716339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 26003627 - 26003671
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26003627 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 26003671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 7720157 - 7720116
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7720157 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 7720116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 16755013 - 16754968
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  16755013 ttagttgttttaacatttgcaatgttgcacatgttagacaaaccct 16754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 43806398 - 43806357
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43806398 ttgttttaacatgtgcaatgttgcacatgttagacaaaccct 43806357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 36612867 - 36612912
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||    
T  36612867 ttagttattttaacatgagcaatgttgcacatgttagacaaaccct 36612912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 36620718 - 36620763
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||    
T  36620718 ttagttattttaacatgagcaatgttgcacatgttagacaaaccct 36620763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 38148337 - 38148381
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||| |||||||||| |||||||||||    
T  38148337 ttagttgttttaacatgtgcaaagttgcacatggtagacaaaccc 38148381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 23932745 - 23932706
Alignment:
Q  4 gagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  23932745 gagtttttctatcatgtgcaaatttgcatatattaagaag 23932706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5853458 - 5853500
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  5853458 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 5853500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16493527 - 16493569
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  16493527 tatgagtttttctatcatgtgcaaatttgcacatgttaagaag 16493569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22704720 - 22704678
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  22704720 tatgagtttttctatcatgtgcaaatttgcacatcttaagaag 22704678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 29981364 - 29981405
Alignment:
Q  147 ttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  29981364 ttgttttaacatgtgcaatattgcatatgttagacaaaccct 29981405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 45062380 - 45062339
Alignment:
Q  2 atgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  45062380 atgagtttttctatcatgtgcaaatttgcacatattaagaag 45062339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 12016700 - 12016664
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  12016700 ttaacatgtgcaatattgcacatgttagacaaaccct 12016664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 15411766 - 15411802
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15411766 tttaacatgtgcaatattgcacatgttagacaaaccc 15411802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 16126703 - 16126739
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16126703 ttaacatgtgcaatattgcacatgttagacaaaccct 16126739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 19228459 - 19228423
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19228459 ttaacatgtgcaatattgcacatgttagacaaaccct 19228423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 23932599 - 23932563
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||||||||    
T  23932599 tttaacatgtgcaatattgcacatgttagacaaaccc 23932563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 26229997 - 26230033
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26229997 ttaacatgtgcaatattgcacatgttagacaaaccct 26230033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 27665179 - 27665223
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||  |||||||||||||| |||||||||||||||||||||    
T  27665179 ttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 27665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 35729150 - 35729114
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35729150 tttaacatgtgcaatattgcacatgttagacaaaccc 35729114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 5583702 - 5583737
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  5583702 ttaacatgtgcaatattgcacatgttagacaaaccc 5583737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 8064881 - 8064842
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagaca 182  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  8064881 ttagatgttttaacacgtgcaatgttgcacatgttagaca 8064842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 10690816 - 10690781
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  10690816 ttaacatgtgcaatattgcacatgttagacaaaccc 10690781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 11660892 - 11660931
Alignment:
Q  4 gagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  11660892 gagtttttctatcatgtgcaaatttgcacatgttaagaag 11660931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 16919298 - 16919333
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  16919298 ttaacatgtgcaatattgcacatgttagacaaaccc 16919333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 22705488 - 22705453
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  22705488 ttaacatgtgcaatattgcacatgttagacaaaccc 22705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 39904192 - 39904227
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||| |||||||||||||||||||||    
T  39904192 ttaacatgtgcaatattgcacatgttagacaaaccc 39904227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15232014 - 15231972
Alignment:
Q  1 tatgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||| ||||||||||||||| || ||||||||    
T  15232014 tatgagtttttctattatgtgcaaatttgcacatgttaagaag 15231972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6109567 - 6109530
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6109567 gtttttctatcatgtgcaaatttgcacatgttaagaag 6109530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 8065301 - 8065264
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  8065301 gtttttctatcatgtgcaaatttgcacatgttaagaag 8065264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 12016844 - 12016807
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  12016844 gtttttctatcatgtgcaaatttgcacatattaagaag 12016807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 12919495 - 12919528
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||||||||||| ||||||||||||||||||    
T  12919495 tttaacatgtgcaatattgcacatgttagacaaa 12919528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 16126559 - 16126596
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  16126559 gtttttctatcatgtgcaaatttgcacatgttaagaag 16126596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 29795092 - 29795055
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  29795092 tttaatatgtgcaatattgcacatgttagacaaaccct 29795055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 43388481 - 43388518
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  43388481 gtttttctatcatgtgcaaatttgcacatgttaagaag 43388518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 43388902 - 43388947
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| ||||| ||||||||| |||||||| |||||||||||||    
T  43388902 ttagttgctttaagatgtgcaatattgcacatattagacaaaccct 43388947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4576326 - 4576362
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||| |||||| |||||||    
T  4576326 gtttttctatcatgtgcaaattcgcatatgttaagaa 4576362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 14377467 - 14377423
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||  |||||||||||||| |||||| ||||||||||||||    
T  14377467 ttagttgccttaacatgtgcaatattgcacgtgttagacaaaccc 14377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 20566161 - 20566197
Alignment:
Q  151 tttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  20566161 tttaacatgtgcaatattgcacatgttagacagaccc 20566197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 24729577 - 24729613
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  24729577 gtttttctatcatgtgcaaatttgcacatgttaagaa 24729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 29157829 - 29157865
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  29157829 gtttttctatcatgtgcaaatttgcacatgttaagaa 29157865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 38248420 - 38248456
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaa 42  Q
    |||||||||||||||||||||||||| || |||||||    
T  38248420 gtttttctatcatgtgcaaatttgcacatgttaagaa 38248456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 13794 - 13838
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  13794 ttagttgttttaacatgtgcaatgttgcacatgttagaaaaaccc 13838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 94014 - 94055
Alignment:
Q  2 atgagtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  94014 atgagtttttctatcatgtgcaaatttgcatatgttaagaag 94055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 94154 - 94195
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  94154 ttagttgatttaacatgtgcaatgttgcatatgttagacaaa 94195  T

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Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 31836 - 31881
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  31836 ttagttgctctaacatgtgcaatgttgcacatgttagacaaaccct 31881  T

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Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 37259 - 37294
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  37259 ttaacatgtgcaatgttgcacatgttagacaaaccc 37294  T

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Target: scaffold0111; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 37114 - 37151
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  37114 gtttttctatcatgtgcaaatttgcacatgttaagaag 37151  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 52923 - 52959
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  52923 ttaacatgtgcaatattgcacatgttagacaaaccct 52959  T

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Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 52779 - 52816
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  52779 gtttttctatcatgtgcaaatttgcacatgttaagaag 52816  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 145711 - 145675
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    |||||||||||||| ||||||||||||||||||||||    
T  145711 ttaacatgtgcaatattgcacatgttagacaaaccct 145675  T

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Target: scaffold0017; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 145855 - 145818
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  145855 gtttttctatcatgtgcaaatttgcacatgttaagaag 145818  T

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Target: scaffold0631 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 484 - 443
Alignment:
Q  143 ttagttgttttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    ||||||| ||||||||||||||| |||||||||||| |||||    
T  484 ttagttgatttaacatgtgcaatattgcacatgttaaacaaa 443  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 13263 - 13226
Alignment:
Q  6 gtttttctatcatgtgcaaatttgcatattttaagaag 43  Q
    |||||||||||||||||||||||||| || ||||||||    
T  13263 gtttttctatcatgtgcaaatttgcacatgttaagaag 13226  T

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Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 13119 - 13083
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaaccct 188  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  13119 ttaacatatgcaatattgcacatgttagacaaaccct 13083  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 193377 - 193410
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||| |||||||||||||||||||    
T  193377 ttaacatgtgcaatattgcacatgttagacaaac 193410  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 2447 - 2476
Alignment:
Q  5 agtttttctatcatgtgcaaatttgcatat 34  Q
    ||||||||||||||||||||||||||||||    
T  2447 agtttttctatcatgtgcaaatttgcatat 2476  T

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Target: scaffold0727 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 5724 - 5692
Alignment:
Q  152 ttaacatgtgcaatgttgcacatgttagacaaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  5724 ttaacatgtgcaatattgcacatgttagacaaa 5692  T

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Target: scaffold0305 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 17951 - 17979
Alignment:
Q  157 atgtgcaatgttgcacatgttagacaaac 185  Q
    |||||||||||||||||||||||||||||    
T  17951 atgtgcaatgttgcacatgttagacaaac 17979  T

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