View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_64 (Length: 251)
Name: NF5876_low_64
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_64 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 49941258 - 49941498
Alignment:
| Q |
11 |
cagagaataacttaaacccaacttcccaacatatgtgatttttgacagaattgcatctggaaacaagtctactgtgatttgtgactccaatttacaaaag |
110 |
Q |
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| T |
49941258 |
cagagaataacttaaacccaacttcccaacatatgtgatttttgacagaattgcatctggaaacaagtctactgtgatttgtgactccaatttacaaaag |
49941357 |
T |
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| Q |
111 |
aactttccggtagtgaaatattatctctaccttccaaaaaagtgattttggaattgcttaacaagtgcttccacaaataaataattatacaataagtaaa |
210 |
Q |
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| T |
49941358 |
aactttccggtagtgaaatattatctctaccttccaaaaaagtgattttggaattgcttaacaagtgcttccacaaataaataattatacaataagtaaa |
49941457 |
T |
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| Q |
211 |
caagcataaatatgatcataagtacctggcacataatattt |
251 |
Q |
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| T |
49941458 |
caaacataaacatgattataagtacctggcacataatattt |
49941498 |
T |
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