View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_65 (Length: 251)
Name: NF5876_low_65
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 9165698 - 9165831
Alignment:
| Q |
19 |
agtgaaaatctcttcatgctcccaatcatcacctttaacagatatacaggtacaactatacttacagaaagaataaatacaaaatctgatttgaaagttt |
118 |
Q |
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| T |
9165698 |
agtgaaaatctcttcatgctcccaatcatcacctgtaacagatatacaggtacaactatacttacagaaagaataaatacaaactctgatttgaaagttt |
9165797 |
T |
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| Q |
119 |
tcaatttataccgagttaactctctctctctctc |
152 |
Q |
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| T |
9165798 |
tcaatttataccgagttaactctctctctctctc |
9165831 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 9154451 - 9154524
Alignment:
| Q |
19 |
agtgaaaatctcttcatgctcccaatcatcacctttaacagatatacaggtacaactatacttacagaaagaataa |
94 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | |||| | ||||||||||| |||||||||||| |
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| T |
9154451 |
agtgaaaatctcttcatgctcccaatcatcacctgtaacaggtgtacaagcacaactatact--cagaaagaataa |
9154524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 9165886 - 9165939
Alignment:
| Q |
199 |
atcaacggtatagtcaagctaattagttgt-ctacaaaatcagcacattgtact |
251 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
9165886 |
atcaacggtatagtcaagctaattagttgtgctacgaaatcagcacattgtact |
9165939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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