View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_67 (Length: 250)
Name: NF5876_low_67
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41747061 - 41746822
Alignment:
| Q |
1 |
cacacaaggtagtgcttcatttacggtactaatcaaaattttcaccaaacacttttccatatttggaagtgcaactataatgctcgctagtgtcacaata |
100 |
Q |
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| T |
41747061 |
cacataaggtagtgcttcatttacggtactaatcaaaattttcaccaaacacttttccatatttggaagtgcaactataatgctcgctagtgtcacaata |
41746962 |
T |
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| Q |
101 |
ggaagtgaccaattataaggaggttctacaccatgcaaaggaagaatttggtcacaatcaaattctccaactcctttaaatccatgtaacattgaacatt |
200 |
Q |
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| T |
41746961 |
ggaagtgaccaattataaggaggttctacaccatgcaaaggaagaatttggtcacaatcaaattctccaactcctttaaatccatgtaacattgaacatt |
41746862 |
T |
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| Q |
201 |
tttgctctaacaattcaataacaagttttggctgcttctt |
240 |
Q |
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| T |
41746861 |
tttgctctaacaattcaataacaagttttggctgcttctt |
41746822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41738699 - 41738935
Alignment:
| Q |
1 |
cacacaaggtagtgcttcatttacggtactaatcaaaattttcaccaaacacttttccatatttggaagtgcaactataatgctcgctagtgtcacaata |
100 |
Q |
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|||| |||| ||||||||||||| ||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
41738699 |
cacataaggcagtgcttcatttagagtactaatcaattttttcagcaaacacttctcaatatttggaagtgcaactataatgcttgctagtgtcacaatg |
41738798 |
T |
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| Q |
101 |
ggaagtgaccaattataaggaggttctacaccatgcaaaggaagaatttggtcacaatcaaattctccaactcctttaaatccatgtaacattgaacatt |
200 |
Q |
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| T |
41738799 |
gggagtgaccaattatatggaggttctacaccatgcaaaggaggaattcggtcacaatcaaattctccaactcctttaaatccttgcaggattgaacatt |
41738898 |
T |
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| Q |
201 |
tttgctctaacaattcaataacaagttttggctgctt |
237 |
Q |
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| T |
41738899 |
ttttctccaataactcaataaaaagttttggctgctt |
41738935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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