View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_68 (Length: 250)

Name: NF5876_low_68
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_68
NF5876_low_68
[»] chr5 (20 HSPs)
chr5 (26-228)||(9379929-9380132)
chr5 (31-216)||(9380601-9380785)
chr5 (11-141)||(23322320-23322450)
chr5 (26-140)||(34634067-34634181)
chr5 (31-163)||(1501031-1501163)
chr5 (26-142)||(5841098-5841214)
chr5 (41-141)||(25088418-25088518)
chr5 (41-141)||(25146387-25146487)
chr5 (25-113)||(42792946-42793034)
chr5 (31-111)||(43183234-43183314)
chr5 (50-111)||(23322121-23322182)
chr5 (31-111)||(5840881-5840961)
chr5 (50-93)||(20244521-20244564)
chr5 (26-80)||(15933610-15933664)
chr5 (42-118)||(10570350-10570426)
chr5 (21-111)||(15933350-15933440)
chr5 (42-118)||(1156039-1156115)
chr5 (42-118)||(1156251-1156327)
chr5 (42-118)||(9040758-9040834)
chr5 (42-118)||(37812518-37812594)
[»] chr2 (18 HSPs)
chr2 (26-225)||(4734091-4734289)
chr2 (31-228)||(4733308-4733504)
chr2 (25-179)||(14159204-14159358)
chr2 (26-181)||(14160338-14160493)
chr2 (25-141)||(38695110-38695226)
chr2 (26-139)||(4410599-4410712)
chr2 (31-141)||(4409164-4409274)
chr2 (16-113)||(18166622-18166719)
chr2 (26-111)||(38694887-38694972)
chr2 (26-141)||(42962767-42962882)
chr2 (26-111)||(42963020-42963105)
chr2 (26-92)||(18171351-18171417)
chr2 (172-225)||(4734060-4734113)
chr2 (19-118)||(39110064-39110163)
chr2 (42-118)||(7182425-7182501)
chr2 (70-142)||(34128271-34128343)
chr2 (42-118)||(7031880-7031956)
chr2 (42-118)||(10414305-10414381)
[»] chr1 (12 HSPs)
chr1 (31-228)||(9114823-9115020)
chr1 (46-225)||(9115936-9116114)
chr1 (26-228)||(14904468-14904668)
chr1 (31-178)||(14903810-14903957)
chr1 (26-163)||(17690871-17691008)
chr1 (31-163)||(17689740-17689871)
chr1 (25-139)||(37499396-37499510)
chr1 (172-218)||(9115912-9115958)
chr1 (31-74)||(37499180-37499223)
chr1 (19-117)||(7204275-7204373)
chr1 (42-118)||(7204214-7204290)
chr1 (26-98)||(30335237-30335308)
[»] chr7 (19 HSPs)
chr7 (34-178)||(18471691-18471835)
chr7 (31-177)||(8328199-8328345)
chr7 (26-174)||(18470138-18470286)
chr7 (31-197)||(8342577-8342730)
chr7 (26-141)||(4265198-4265313)
chr7 (31-180)||(8328976-8329112)
chr7 (54-141)||(8594089-8594176)
chr7 (119-197)||(8341924-8342001)
chr7 (31-98)||(8905644-8905711)
chr7 (183-220)||(8328906-8328943)
chr7 (183-220)||(8342523-8342560)
chr7 (31-107)||(4264980-4265056)
chr7 (172-228)||(8328370-8328426)
chr7 (50-97)||(25749396-25749443)
chr7 (42-80)||(19069765-19069803)
chr7 (129-215)||(8594840-8594924)
chr7 (42-118)||(23350990-23351066)
chr7 (42-118)||(23351050-23351126)
chr7 (42-117)||(39383820-39383895)
[»] chr4 (32 HSPs)
chr4 (26-228)||(28451412-28451613)
chr4 (25-179)||(9450842-9450996)
chr4 (26-178)||(28450749-28450901)
chr4 (17-140)||(4437670-4437793)
chr4 (26-181)||(9449714-9449869)
chr4 (31-139)||(49028487-49028595)
chr4 (31-141)||(3990897-3991007)
chr4 (31-141)||(9268027-9268137)
chr4 (31-141)||(10468702-10468812)
chr4 (31-141)||(52677556-52677666)
chr4 (31-139)||(12585382-12585490)
chr4 (31-141)||(45667235-45667345)
chr4 (31-140)||(4438996-4439105)
chr4 (25-98)||(17931286-17931359)
chr4 (26-111)||(49028262-49028347)
chr4 (31-98)||(10202682-10202749)
chr4 (25-111)||(10286408-10286494)
chr4 (31-98)||(17932140-17932207)
chr4 (31-98)||(25225794-25225861)
chr4 (31-84)||(12315859-12315912)
chr4 (30-139)||(21038118-21038226)
chr4 (26-111)||(52677804-52677889)
chr4 (45-109)||(16067578-16067642)
chr4 (31-111)||(36098749-36098829)
chr4 (50-141)||(16067347-16067438)
chr4 (31-104)||(21325689-21325762)
chr4 (31-111)||(12585162-12585242)
chr4 (43-111)||(10468496-10468564)
chr4 (51-141)||(622082-622171)
chr4 (31-104)||(622316-622389)
chr4 (42-118)||(51949588-51949664)
chr4 (31-95)||(53892255-53892319)
[»] chr8 (12 HSPs)
chr8 (26-228)||(10535999-10536201)
chr8 (26-178)||(10536712-10536864)
chr8 (31-139)||(32539409-32539517)
chr8 (17-111)||(30905978-30906072)
chr8 (31-98)||(18203321-18203388)
chr8 (31-113)||(30905400-30905482)
chr8 (42-117)||(9237724-9237799)
chr8 (51-93)||(32538283-32538325)
chr8 (42-118)||(4325941-4326017)
chr8 (42-118)||(5876803-5876879)
chr8 (50-98)||(18202796-18202844)
chr8 (42-118)||(45467452-45467528)
[»] chr3 (24 HSPs)
chr3 (25-138)||(16907928-16908041)
chr3 (26-141)||(27864798-27864913)
chr3 (23-141)||(24107147-24107265)
chr3 (25-139)||(46684096-46684210)
chr3 (25-98)||(31596752-31596825)
chr3 (31-139)||(38758832-38758939)
chr3 (26-113)||(27865048-27865135)
chr3 (26-111)||(3171488-3171573)
chr3 (25-109)||(24107405-24107489)
chr3 (26-118)||(46685510-46685602)
chr3 (26-113)||(19860490-19860577)
chr3 (31-141)||(54446237-54446348)
chr3 (45-111)||(38758626-38758692)
chr3 (31-84)||(18025884-18025937)
chr3 (48-141)||(19860712-19860804)
chr3 (26-98)||(14812426-14812498)
chr3 (51-111)||(18026103-18026163)
chr3 (26-141)||(3171711-3171823)
chr3 (43-110)||(21792233-21792300)
chr3 (31-76)||(11422383-11422428)
chr3 (50-107)||(21792373-21792430)
chr3 (31-111)||(54446024-54446104)
chr3 (42-118)||(18024884-18024960)
chr3 (42-118)||(30385196-30385272)
[»] scaffold0069 (2 HSPs)
scaffold0069 (31-141)||(19899-20009)
scaffold0069 (31-111)||(20151-20230)
[»] scaffold0008 (2 HSPs)
scaffold0008 (31-139)||(266844-266952)
scaffold0008 (50-111)||(266644-266705)
[»] chr6 (10 HSPs)
chr6 (25-141)||(5367637-5367752)
chr6 (24-141)||(3659174-3659290)
chr6 (26-140)||(8286787-8286901)
chr6 (31-163)||(3720054-3720187)
chr6 (26-118)||(8287410-8287502)
chr6 (26-111)||(3658951-3659036)
chr6 (17-117)||(30859910-30860010)
chr6 (42-117)||(19048259-19048334)
chr6 (42-117)||(29833956-29834031)
chr6 (42-117)||(29835620-29835695)
[»] scaffold0006 (2 HSPs)
scaffold0006 (31-139)||(93636-93743)
scaffold0006 (50-98)||(93896-93944)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 9379929 - 9380132
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||    
T  9379929 aggcttaattaatgaattggtcccttaagttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaacttataatatgt 9380028  T
Q  126 ttgccaaataaatccttttcgttaaattttgt--aaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataa 223  Q
    | |||||||||||||||| |||||||||||||  |||||||||||||||||||||||  ||||||| |||||||||  ||||||||| ||||||||| ||    
T  9380029 tagccaaataaatcctttccgttaaattttgtaaaaaaaactgttaatcttcatcat-taaacccagaattcatcactcattcatcatcaaaacccaaaa 9380127  T
Q  224 ttcat 228  Q
    |||||    
T  9380128 ttcat 9380132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 9380785 - 9380601
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||| |||| | |    
T  9380785 taattaatgaattgatcccttaagttatttgttggttacattttgatcccataagttattaatgttacgttttggtcccttcacttataatatgttagtc 9380686  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaa 216  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||||||||||||  | ||||||| |||||    
T  9380685 aaataaatccttcccgttaaattttgtaaaaaactgttaatcttcatcat-taaacccaaaattcatcactccttcatcatcaaaa 9380601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 23322450 - 23322320
Alignment:
Q  11 agaatattaaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccct 110  Q
    ||||||||||||   |||| |||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||    
T  23322450 agaatattaaaatttaggcttaattaatgatttggtcccttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtccct 23322351  T
Q  111 taacttataatctgtttgccaaataaatcct 141  Q
    ||| |||  || |||| ||||||||||||||    
T  23322350 taagttagtatatgttagccaaataaatcct 23322320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 34634067 - 34634181
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| ||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||| ||| | |||||    
T  34634067 aggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttagactctgt 34634166  T
Q  126 ttgccaaataaatcc 140  Q
    | | |||||||||||    
T  34634167 tagtcaaataaatcc 34634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 1501163 - 1501031
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||| | ||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||| | |    
T  1501163 taattaatcatttgatcccttaagttatttattggtttcattttggtcccataaattattaacgttacattttggtcccttaagttatattccgttagtc 1501064  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaa 163  Q
    ||||||||||||   ||||| |||||| |||||    
T  1501063 aaataaatccttgctgttaacttttgtcaaaaa 1501031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 5841214 - 5841098
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||| |||  || |||    
T  5841214 aggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataaattattaacgttacaatttggttctttaagttagtatttgt 5841115  T
Q  126 ttgccaaataaatcctt 142  Q
    | |||||||||||||||    
T  5841114 tagccaaataaatcctt 5841098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 25088418 - 25088518
Alignment:
Q  41 attggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcc 140  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||  |||  ||||||| |||||||||||||    
T  25088418 attggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcc 25088517  T
Q  141 t 141  Q
    |    
T  25088518 t 25088518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 25146387 - 25146487
Alignment:
Q  41 attggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcc 140  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||  |||  ||||||| |||||||||||||    
T  25146387 attggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcc 25146486  T
Q  141 t 141  Q
    |    
T  25146487 t 25146487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 42792946 - 42793034
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaa 113  Q
    ||||| |||||||||| ||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||  |||||||||||||    
T  42792946 aaggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataaattattaatgttacaatttggtcccttaa 42793034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 43183234 - 43183314
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  43183234 taattaataatttggtcccttaagttatttgttggttacattttggtcccataaattattaacattacaatttggtccctt 43183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 23322121 - 23322182
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| |||||  |||||||||||    
T  23322121 ttaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 23322182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 5840881 - 5840961
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||  |||||| ||||||||||||||||||| ||||| || |||||| |||||||||||||  |||| ||||||    
T  5840881 taattaatgatgtggtcccttaagttatttgttggttatattttagtgccataagttattaacgttacaatttgatccctt 5840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 20244564 - 20244521
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaac 93  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  20244564 ttaaattatttgttggttacattttggtcccataaattattaac 20244521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 15933664 - 15933610
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtccc 80  Q
    |||| ||||| |||| ||||||| ||||||||||||||||||||||||| |||||    
T  15933664 aggcttaattcatgatttggtcccttaagttatttgttggttacattttagtccc 15933610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 10570426 - 10570350
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| |||||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  10570426 ttggtcccttaacttattttttggtttcattttggtcccttaactattaaaagtttcgttttggtcccttaacttat 10570350  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 15933350 - 15933440
Alignment:
Q  21 aaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| |||| |||| |||||  |||||| |||  |||||||||||||| ||||| ||| ||||| |||||||||||||  ||| |||||||    
T  15933350 aaagtaggcttaatcaatgatgtggtcccttatattatttgttggttatattttagtctcataagttattaacgttacaatttagtccctt 15933440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 1156039 - 1156115
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  1156039 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 1156115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 1156327 - 1156251
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  1156327 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 1156251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 9040758 - 9040834
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  9040758 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 9040834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 37812594 - 37812518
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  37812594 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 37812518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 4734289 - 4734091
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  4734289 aggcttaattaatgaattggtcccttaagttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaacttataatctgt 4734190  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataatt 225  Q
    | |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||  ||||||| |||||||||  | ||||||| ||||||||| ||||    
T  4734189 tagccaaataaatcctttccgttaaattttgtaaaatactgttaatattcatcat-taaacccagaattcatcactccttcatcatcaaaacccaaaatt 4734091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 4733308 - 4733504
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||| |||    
T  4733308 taattaatgatttgatcccttaaattatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaatttataatccgttagcc 4733407  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataattcat 228  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||  ||| | | |||||||||  | ||||||| |||||| ||||||||||    
T  4733408 aaataaatcctttatgttaaattttgtaaaaaactgttaatcttcatcat-taaatctagaattcatcactccttcatcatcaaaactcataattcat 4733504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 14159204 - 14159358
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  14159204 aaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctg 14159303  T
Q  125 tttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatca 179  Q
    || |||||||||||||||  ||| || |||||| | ||| ||||||  |||||||    
T  14159304 ttagccaaataaatccttgccgtcaacttttgtcataaaatgttaaaattcatca 14159358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 14160493 - 14160338
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||    
T  14160493 aggcttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttgactcatactctgt 14160394  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatc 181  Q
    | ||||| |||||||||  ||| || |||||| |||||| |||||  |||||||||    
T  14160393 tagccaagtaaatccttaccgtcaacttttgtcaaaaaccgttaaaattcatcatc 14160338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 38695226 - 38695110
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||  || ||    
T  38695226 aaggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaacgttacaatttggtcccttaagttagtatttg 38695127  T
Q  125 tttgccaaataaatcct 141  Q
    || ||||||||||||||    
T  38695126 ttagccaaataaatcct 38695110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 4410712 - 4410599
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||| ||| |||||||||||||| ||| | |||||    
T  4410712 aggcttaattaatgatttggtcccttaagttatttgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttagactctgt 4410613  T
Q  126 ttgccaaataaatc 139  Q
    | ||||||||||||    
T  4410612 tagccaaataaatc 4410599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 4409164 - 4409274
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||  |||| ||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| | | |||| |||    
T  4409164 taattaatgatttggtctcttaaattatttgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaagttaaattatgttagcc 4409263  T
Q  131 aaataaatcct 141  Q
    || ||||||||    
T  4409264 aagtaaatcct 4409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 18166622 - 18166719
Alignment:
Q  16 attaaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaa 113  Q
    |||||||||  ||| |||||||||| ||||||| |||| ||||||||||||||||||||| || ||||| |||||||||||||  |||||||||||||    
T  18166622 attaaaaagttggcttaattaatgatttggtcccttaaattatttgttggttacattttgatctcataagttattaacgttacaatttggtcccttaa 18166719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 38694887 - 38694972
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| ||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  38694887 aggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 38694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 42962767 - 42962882
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| ||| |||||||||||||| ||||||| || ||||| | | |||||||||  ||||||||||||| |||  || |||    
T  42962767 aggcttaattaatgatttggtcccttaggttatttgttggttgcattttgatctcataagtgactaacgttacaatttggtcccttaagttagtatatgt 42962866  T
Q  126 ttgccaaataaatcct 141  Q
    | ||||||||||||||    
T  42962867 tagccaaataaatcct 42962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 42963105 - 42963020
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||  |||||| ||||    
T  42963105 aggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtctcataagttattaacgttacaatttggtgcctt 42963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 18171417 - 18171351
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaa 92  Q
    |||| ||||||||||  |||||| |||| |||||||||||||||||||| ||||||||| |||||||    
T  18171417 aggcttaattaatgatatggtcccttaaattatttgttggttacattttagtcccataagttattaa 18171351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 4734113 - 4734060
Alignment:
Q  172 cttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataatt 225  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||    
T  4734113 cttcatcatcaaaacccaaaatttatcatccattcatcagcaaaacccagaatt 4734060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 39110064 - 39110163
Alignment:
Q  19 aaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||| ||||| |||||| | | ||||||| |||| |||||| |||||| |||||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  39110064 aaaaaaaaggcttaattactcatttggtcccttaacttattttttggtttcattttggtcccttaactattaaaagtttcgttttggtcccttaacttat 39110163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 7182425 - 7182501
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    |||||||||||| ||| || |||||| |||||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  7182425 ttggtcctttaacttactttttggtttcattttggtcccttaactattaaaagtttcgttttggtcccttaacttat 7182501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 34128343 - 34128271
Alignment:
Q  70 attttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcctt 142  Q
    |||||| || ||||| ||| |||| ||||||||| ||||||||| ||||| |||||| | |||||||||||||    
T  34128343 attttgatctcataacttaataacattacgttttagtcccttaatttatactctgttagtcaaataaatcctt 34128271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 7031880 - 7031956
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattatt-aacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| ||| || |||||| |||||||||||| |||| |||| || ||| |||||||||||||||||||||    
T  7031880 ttggtcccttaacttactttttggtttcattttggtccc-taaaatattaaaagtttcgttttggtcccttaacttat 7031956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 10414381 - 10414305
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    |||||||||||| |||||| ||||||   |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  10414381 ttggtcctttaacttattttttggttttgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 10414305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 9114823 - 9115020
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||| |||    
T  9114823 taattaatgattttgtcccttaagttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaatttataattcgttagcc 9114922  T
Q  131 aaataaatccttttcgttaaattttgt-aaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataattcat 228  Q
    |||||||||||||   ||||||||||| |||||||||||||||||||||||  ||||||| |||||||||  ||||||||| |||||||||||||||||    
T  9114923 aaataaatcctttctattaaattttgtaaaaaaactgttaatcttcatcat-taaacccataattcatcactcattcatcatcaaaacccataattcat 9115020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 9116114 - 9115936
Alignment:
Q  46 tcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatccttttc 145  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||| ||| || ||||||||| ||| |    
T  9116114 tcctttaagttatttgttggttacattttggtctcataagttattaacgtttcgttttggtctcttaacttataatccgttagctaaataaatcatttcc 9116015  T
Q  146 gttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataatt 225  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||||  | ||||||| ||||||||| ||||    
T  9116014 gttaaattttgtaaaatactgttaatcttcatcat-taaacccaaaattcatcactccttcatcatcaaaacccaaaatt 9115936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 14904668 - 14904468
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| || |||| |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||    
T  14904668 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatctgt 14904569  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataatt 225  Q
    | | |||||||||| |||  |||||||||| ||||||||| |||||||||||||| | |||||| ||||||||| |  ||||||| |||||| || ||||    
T  14904568 tagtcaaataaatcatttctgttaaattttataaaaaactattaatcttcatcattg-aacccagaattcatca-ctcttcatcatcaaaactcaaaatt 14904471  T
Q  226 cat 228  Q
    |||    
T  14904470 cat 14904468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 14903810 - 14903957
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| || ||| | |    
T  14903810 taattaatgatttggtcccttaagttatttgttggttacattttgatcccataagttattaacgttacgttttggtcccctaacttatagtccgttagtc 14903909  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatc 178  Q
    ||||||||| ||| |||||||||  || |||| || ||||||||||||    
T  14903910 aaataaatcatttccgttaaattgggtgaaaatctattaatcttcatc 14903957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 17691008 - 17690871
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| |||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||||||||||| ||| |    
T  17691008 aggcttaattaatgatttggtcccttaagttatttgttggttatgttctggtcccataagttattaacgttacgttttggtcccttaacttatattctat 17690909  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaa 163  Q
    | |||||||||||||||  ||| || |||||| |||||    
T  17690908 tagccaaataaatccttgccgtcaacttttgtcaaaaa 17690871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 17689740 - 17689871
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| ||||||||||||||| |||| ||| |||| ||||| |||| |||||||| |||| ||||||||||||||| || ||| ||     
T  17689740 taattaatgatttggtcccttaagttatttgttgattacgttt-ggtctcataagttataaacgttacattttagtcccttaacttatattccgttagct 17689838  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaa 163  Q
    ||||||||||||  ||| || |||||| |||||    
T  17689839 aaataaatccttgccgtcaacttttgtcaaaaa 17689871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 37499510 - 37499396
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| |||  |  ||||||||||||||||||||||||||||| ||||| ||||||| ||||   ||| ||| ||||| |||  |||||    
T  37499510 aaggcttaattaatgatttgacctcttaagttatttgttggttacattttggtctcataagttattaatgttataatttcgtctcttaagttagtatctg 37499411  T
Q  125 tttgccaaataaatc 139  Q
    || ||||||||||||    
T  37499410 ttagccaaataaatc 37499396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 9115958 - 9115912
Alignment:
Q  172 cttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacc 218  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  9115958 cttcatcatcaaaacccaaaatttatcatccattcatcaccaaaacc 9115912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 37499180 - 37499223
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacatttt 74  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||    
T  37499180 taattaatgatttggtcccttaagttatttgttgcttacatttt 37499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 7204373 - 7204275
Alignment:
Q  19 aaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaactta 117  Q
    ||||| ||||| |||||| | | ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| ||||||||||||||||||||    
T  7204373 aaaaaaaaggcttaattactcatttggtccattaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaactta 7204275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 7204290 - 7204214
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| ||| || |||||| |||||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  7204290 ttggtcccttaacttactttttggtttcattttggtcccttaactattaaaagtttcgttttggtcccttaacttat 7204214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 30335308 - 30335237
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||| ||||||||||  |||||||| ||||||||||||  ||||| ||| ||| ||||| |||||||||||||    
T  30335308 aggcttaattaatgatgtggtcctt-aagttatttgttacttacactttagtctcataagttattaacgttac 30335237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 18471835 - 18471691
Alignment:
Q  34 ttaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaa 133  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| |||  ||||||||||||||||||||||||||| ||||||    
T  18471835 ttaatgatttggtcccttaagttatctgttggttacattttggtctcataagttattaacattatattttggtcccttaacttataatctgttagccaaa 18471736  T
Q  134 taaatccttttcgttaaattttgtaaaaaactgttaatcttcatc 178  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||    
T  18471735 taaatcatttccgttaaattttgtaaaaatctgttaatcttcatc 18471691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 8328199 - 8328345
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||||| ||||| ||||||||||| || |||| ||||||||| || || |||||||||||||||||| ||||||||||||||||| |||| |||    
T  8328199 taattaatgaatcggtcccttaagttatttattagttagattttggtctcacaagttattaacgttacgttttagtcccttaacttataatatgttagcc 8328298  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaactgttaatcttcat 177  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  8328299 aaataaatcctttccgttaaattttgtaaaaaattgttaatcttcat 8328345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 18470138 - 18470286
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| || || | |||| |||||||||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||||    
T  18470138 aggcttaattaatgattttgtgccttaaattatttgttggttacattttggccacataagttattaatgttaggttttggtcccttaacttataatctgt 18470237  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatctt 174  Q
    | | |||||||||||||| ||||||||||| ||||||||||||||||||    
T  18470238 tagtcaaataaatcctttccgttaaattttataaaaaactgttaatctt 18470286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 8342730 - 8342577
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||| |||| ||||||||||||            ||||  || |||    
T  8342730 taattaatgaattggtccattaagttattttttggttacactttggtctcataagttactaacattacgttttggt------------aatccattagcc 8342643  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcat 197  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  8342642 aaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcat-taaacccaaaattcat 8342577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 4265313 - 4265198
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| |||||||| |||| |||||||||||| |||||||| |||||||||||||  |||||||| |||| |||  ||||||    
T  4265313 aggcttaattaatgatttggtcccttaagttagttgtcggttacattttgatcccataagttattaacgttacaatttggtccattaagttagtatctgt 4265214  T
Q  126 ttgccaaataaatcct 141  Q
    ||||||||||||||||    
T  4265213 ttgccaaataaatcct 4265198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 8329112 - 8328976
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||            |||||  || ||     
T  8329112 taattaatgaattggtc-tttaagttatttgttggttacattttggtctcaaaagttattaacgttacgttttgg------------taatccattagct 8329026  T
Q  131 aaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcat 180  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  8329025 aaataaatcatttccgttaaattttgtaaaaaactgtcaatcttcatcat 8328976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 8594089 - 8594176
Alignment:
Q  54 gttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcct 141  Q
    ||||||||||| ||| ||||||||||||||| || ||||| |||||||||||||||||||||| |||| |||| ||||| ||||||||    
T  8594089 gttatttgttgattatattttggtcccataagttcttaacattacgttttggtcccttaacttgtaatttgttagccaattaaatcct 8594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 8341924 - 8342001
Alignment:
Q  119 aatctgtttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatcgaaacccaaaattcat 197  Q
    ||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  8341924 aatctattagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcat-taaacccagaattcat 8342001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 8905644 - 8905711
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  8905644 taatcaatgatttggtctcttaagttatttgttggttacattttggtctcataagttattaatgttac 8905711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 8328943 - 8328906
Alignment:
Q  183 aaacccaaaattcatcatccattcatcaccaaaaccca 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8328943 aaacccaaaattcatcatccattcatcaccaaaaccca 8328906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 8342560 - 8342523
Alignment:
Q  183 aaacccaaaattcatcatccattcatcaccaaaaccca 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8342560 aaacccaaaattcatcatccattcatcaccaaaaccca 8342523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 4264980 - 4265056
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtc 107  Q
    ||||||||||  ||||| |||||||||||| ||||| ||||||| ||| ||||| |||||||| ||||  |||||||    
T  4264980 taattaatgatgtggtcttttaagttattttttggtgacattttagtctcataagttattaacattacaatttggtc 4265056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 8328370 - 8328426
Alignment:
Q  172 cttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataattcat 228  Q
    |||| ||||| ||| ||||||||||||| ||||||||||||||||| || |||||||    
T  8328370 cttcgtcatcaaaatccaaaattcatcacccattcatcaccaaaactcagaattcat 8328426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 25749443 - 25749396
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgtta 97  Q
    ||||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  25749443 ttaagttatttgttggttacaatttagtctcataagttattaacgtta 25749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 19069765 - 19069803
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtccc 80  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  19069765 ttggtcctttaacttatttgttggtttcattttggtccc 19069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 8594924 - 8594840
Alignment:
Q  129 ccaaataaatccttttcgttaaattttgtaaaaaact-gttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaa 215  Q
    |||| ||||||||||   ||||||||||| ||||| | ||||||||||||||||| |||||| ||||||||   ||||||||||||||    
T  8594924 ccaattaaatcctttcttttaaattttgtgaaaaaatcgttaatcttcatcatcg-aacccagaattcatc--gcattcatcaccaaa 8594840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 23350990 - 23351066
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  23350990 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 23351066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 23351050 - 23351126
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  23351050 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 23351126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 39383820 - 39383895
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaac-gttacgttttggtcccttaactta 117  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |||||||  ||| ||||||||||||||||||||    
T  39383820 ttggtcccttaacttattttttggtttcgttttggtcccttaa-ttattaaaagtttcgttttggtcccttaactta 39383895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 28451613 - 28451412
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| || |||| ||||||||||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||| ||||||||    
T  28451613 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaacttgtaatctgt 28451514  T
Q  126 ttgccaaataaatccttttcgttaaattttgt-aaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataat 224  Q
    | | |||||||||||||| ||||||||||| | |||||||| |||||||||||||| | |||||| ||||||||| |  ||||||| |||||| || |||    
T  28451513 tagtcaaataaatcctttccgttaaattttataaaaaaactattaatcttcatcattg-aacccagaattcatca-ctcttcatcatcaaaactcaaaat 28451416  T
Q  225 tcat 228  Q
    ||||    
T  28451415 tcat 28451412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 9450996 - 9450842
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  9450996 aaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctg 9450897  T
Q  125 tttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatca 179  Q
    || |||||||||||||||  ||| || |||||| | ||| ||||||  |||||||    
T  9450896 ttagccaaataaatccttgccgtcaacttttgtcataaaatgttaaaattcatca 9450842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 28450749 - 28450901
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| |||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| || ||    
T  28450749 aggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtccgt 28450848  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatc 178  Q
    | | |||||||||| ||| |||||||||  || |||| |||||||||||||||    
T  28450849 tagtcaaataaatcatttccgttaaattgggtgaaaatctgttaatcttcatc 28450901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 4437670 - 4437793
Alignment:
Q  17 ttaaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaactt 116  Q
    ||||||||||||| |||||||||  ||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| ||    
T  4437670 ttaaaaagaaggcttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagtt 4437769  T
Q  117 ataatctgtttgccaaataaatcc 140  Q
    | | |||||| |||||||||||||    
T  4437770 agactctgttagccaaataaatcc 4437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 9449714 - 9449869
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||| ||| ||| |||||    
T  9449714 aggcttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagttattaacgttacgttttgatcccttgactcatactctgt 9449813  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatcatc 181  Q
    | ||||| |||||||||  ||| || |||||| |||||| |||||  |||||||||    
T  9449814 tagccaagtaaatccttaccgtcaacttttgtcaaaaaccgttaaaattcatcatc 9449869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 49028595 - 49028487
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||  || |||| |||    
T  49028595 taattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagtatttgttagcc 49028496  T
Q  131 aaataaatc 139  Q
    |||||||||    
T  49028495 aaataaatc 49028487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 3991007 - 3990897
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||| |||  |||| || |||    
T  3991007 taattattgatttggtcccttaagttaattgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttaatatctattagcc 3990908  T
Q  131 aaataaatcct 141  Q
    |||||||||||    
T  3990907 aaataaatcct 3990897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 9268027 - 9268137
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||  ||||||||||||| |||  || |||| |||    
T  9268027 taattaatgatttggtcccttaagttatttattggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagtatttgttagcc 9268126  T
Q  131 aaataaatcct 141  Q
    |||||||||||    
T  9268127 aaataaatcct 9268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 10468812 - 10468702
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||| |||| |||  ||||| | |||    
T  10468812 taattaatcatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagtatctgctagcc 10468713  T
Q  131 aaataaatcct 141  Q
    |||||||||||    
T  10468712 aaataaatcct 10468702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 52677556 - 52677666
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||| | ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||  |||||||| |||| |||  || |||| |||    
T  52677556 taattaattatttggtcccttaagttatttgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagtatatgttagcc 52677655  T
Q  131 aaataaatcct 141  Q
    |||||||||||    
T  52677656 aaataaatcct 52677666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 12585490 - 12585382
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||||  ||||||||||||| |||  || |||| |||    
T  12585490 taattaatgatttggtcccttaagttatttgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagtatatgttagcc 12585391  T
Q  131 aaataaatc 139  Q
    |||||||||    
T  12585390 aaataaatc 12585382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 45667235 - 45667345
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||  |||| |   |||| |||  ||||||| |||    
T  45667235 taattaatgatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttgattttttaatttaatatctgttagcc 45667334  T
Q  131 aaataaatcct 141  Q
    |||||||||||    
T  45667335 aaataaatcct 45667345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 4439105 - 4438996
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    ||||||||||  |||||| | ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||| ||| | |||||| |      
T  4439105 taattaatgacgtggtccctaaagttatttgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaagttagactctgttagtt 4439006  T
Q  131 aaataaatcc 140  Q
    ||||||||||    
T  4439005 aaataaatcc 4438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 17931286 - 17931359
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  17931286 aaggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaacgttac 17931359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 49028262 - 49028347
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| ||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  49028262 aggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 49028347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 10202682 - 10202749
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  10202682 taattaatgatttgatcctttaaattatttgctggttacattttggtcccataaattattaacgttac 10202749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 10286408 - 10286494
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||  |||| ||||||    
T  10286408 aaggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcccattagttattaacgttacaatttgatccctt 10286494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 17932207 - 17932140
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||| |||||    
T  17932207 taattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaaggttac 17932140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 25225794 - 25225861
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  25225794 taattaatgatttggtcccttaagttatttgttggttatattttggtctcataagttattaacgttac 25225861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 12315859 - 12315912
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataa 84  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  12315859 taattaatgatttggtcctttaagttatttgtaggttacaatttggtcccataa 12315912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 21038118 - 21038226
Alignment:
Q  30 ataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgc 129  Q
    ||||||||||| ||||||||| ||||| ||||||| ||| |||||||| | |||| |||||||||||||  |||||||| |||| |||  || |||| ||    
T  21038118 ataattaatgatttggtcctt-aagttgtttgttgattatattttggttcaataagttattaacgttacaatttggtcctttaagttagtatatgttagc 21038216  T
Q  130 caaataaatc 139  Q
    ||||||||||    
T  21038217 caaataaatc 21038226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 52677889 - 52677804
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||||||||||||||  |||||| ||| ||||||||||||||||||||| ||| ||||| ||||||| ||||   |||||||||||    
T  52677889 aggcataattaatgatgtggtcccttaggttatttgttggttacattttagtctcataagttattaatgttataatttggtccctt 52677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 16067642 - 16067578
Alignment:
Q  45 gtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccc 109  Q
    ||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||  |||||||||    
T  16067642 gtcctttaaattatttgttggttacattttagtctcataagttattaacgttacaatttggtccc 16067578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 36098749 - 36098829
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||  |||||  ||||||||||||||||||| ||||| || |||||||||||||||||||   |||||||||||    
T  36098749 taattaatgatgtggtctcttaagttatttgttggttatattttagttccataaattattaacgttataatttggtccctt 36098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 16067347 - 16067438
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcct 141  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||  |||||||  |||| |||  || || | ||||||||||||||    
T  16067347 ttaagttatttgttggttacattttagttctataaattattaacgttacaatttggtcttttaagttagtatttgctagccaaataaatcct 16067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 21325762 - 21325689
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttg 104  Q
    |||||||||| ||| ||  |||| |||||||||||||||||||| ||| ||| | |||||||||||||||||||    
T  21325762 taattaatgatttgatctcttaaattatttgttggttacattttagtcacattagttattaacgttacgttttg 21325689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 12585162 - 12585242
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||  |||||| ||||||||||||||| ||||||||| ||| ||||| |||||||| ||||  |||| ||||||    
T  12585162 taattaatgacgtggtcccttaagttatttgttgattacattttagtctcataagttattaacattacaatttgatccctt 12585242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 10468496 - 10468564
Alignment:
Q  43 tggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||||| ||||||||||||||||||||||||| |||   ||| || ||||||||||  |||||||||||    
T  10468496 tggtcccttaagttatttgttggttacattttagtcatctaagtttttaacgttacaatttggtccctt 10468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 622082 - 622171
Alignment:
Q  51 taagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcct 141  Q
    |||||||||||||| ||| |||||| ||| |||  ||||||||||||   ||||||||||||| |||  || |||| ||||||||||||||    
T  622082 taagttatttgttgattatattttgatcc-atacgttattaacgttataatttggtcccttaaattagtatttgttagccaaataaatcct 622171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 622389 - 622316
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttg 104  Q
    ||||||||||  || ||| ||||||||||||||||||||||||| | || |||  ||||||| |||||| ||||    
T  622389 taattaatgatgtgatcccttaagttatttgttggttacattttagacctatatgttattaatgttacgatttg 622316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 51949664 - 51949588
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    |||||||||||| ||| || |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  51949664 ttggtcctttaacttactttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 51949588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 53892255 - 53892319
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgt 95  Q
    |||||||||| |||||   ||||||||||| | ||||||| || |||||||||| ||||||||||    
T  53892255 taattaatgatttggtttcttaagttatttataggttacaattgggtcccataagttattaacgt 53892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 10535999 - 10536201
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| || |||| |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||| |||    
T  10535999 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatatgt 10536098  T
Q  126 ttgccaaataaatccttttcgttaaattttgt--aaaaaactgttaatcttcatcatcgaaacccaaaattcatcatccattcatcaccaaaacccataa 223  Q
    | | |||||||||||||| ||||||||||| |  |||||||| |||||||||||||| | |||||| ||||||||| |  ||||||| |||||| || ||    
T  10536099 tagtcaaataaatcctttccgttaaattttataaaaaaaactattaatcttcatcattg-aacccagaattcatca-ctcttcatcatcaaaactcaaaa 10536196  T
Q  224 ttcat 228  Q
    |||||    
T  10536197 ttcat 10536201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 10536864 - 10536712
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| ||||||| |||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| |||||    
T  10536864 aggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtctgt 10536765  T
Q  126 ttgccaaataaatccttttcgttaaattttgtaaaaaactgttaatcttcatc 178  Q
    | | |||||||||| ||| |||||||||  || |||| |||||||||||||||    
T  10536764 tagtcaaataaatcatttccgttaaattgggtgaaaatctgttaatcttcatc 10536712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 32539517 - 32539409
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| |||||||||||||||||||||||||  || ||||| |||||||| |||| |||| |||||||||||||||||| ||| |||    
T  32539517 taattaatgatttggtcccttaagttatttgttggttacattttaatctcataagttattaacattacatttttgtcccttaacttataatccgttagcc 32539418  T
Q  131 aaataaatc 139  Q
    |||||||||    
T  32539417 aaataaatc 32539409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 30906072 - 30905978
Alignment:
Q  17 ttaaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||| ||| | ||||||||||  |||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||    
T  30906072 ttaaaaaaaagacttaattaatgatgtggtctcttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtccctt 30905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 18203388 - 18203321
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||||||||| ||||||| ||||||||||| ||||||| |||||||| |||||| |||||||||||||    
T  18203388 taattaatgatttggtcccttaagttatttattggttatattttggttccataagttattaacgttac 18203321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 30905400 - 30905482
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaa 113  Q
    |||||||||| ||||||| |||| |||||||||||||| |||||  | | |||| |||||||||||||  |||||||||||||    
T  30905400 taattaatgatttggtcccttaaattatttgttggttatattttaattctataacttattaacgttacaatttggtcccttaa 30905482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 9237799 - 9237724
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaactta 117  Q
    ||||||| |||| |||||| |||||||| |||||||||| ||| |  | || ||| ||||||||||||||||||||    
T  9237799 ttggtcccttaacttattttttggttacgttttggtcccttaactattaaaagtttcgttttggtcccttaactta 9237724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 32538283 - 32538325
Alignment:
Q  51 taagttatttgttggttacattttggtcccataaattattaac 93  Q
    ||||||||||||||||||||||||| || ||||| ||||||||    
T  32538283 taagttatttgttggttacattttgatctcataagttattaac 32538325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 4326017 - 4325941
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  4326017 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 4325941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 5876879 - 5876803
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  5876879 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 5876803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 18202796 - 18202844
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    ||||||||||||||| ||||||||| ||| ||||| ||||||| |||||    
T  18202796 ttaagttatttgttgattacattttcgtctcataagttattaatgttac 18202844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 45467452 - 45467528
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  45467452 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 45467528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 16907928 - 16908041
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||    
T  16907928 aaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttatgttttggtcccttaactcatactctg 16908027  T
Q  125 tttgccaaataaat 138  Q
    || |||||||||||    
T  16908028 ttagccaaataaat 16908041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 27864798 - 27864913
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| |||||||  |||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| |||  || |||    
T  27864798 aggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttagtatttgt 27864897  T
Q  126 ttgccaaataaatcct 141  Q
    | ||||||||||||||    
T  27864898 tagccaaataaatcct 27864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 24107147 - 24107265
Alignment:
Q  23 agaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatc 122  Q
    ||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||| |||   ||    
T  24107147 agaaggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtttc 24107246  T
Q  123 tgtttgccaaataaatcct 141  Q
    |||| ||||||||||||||    
T  24107247 tgttagccaaataaatcct 24107265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 46684096 - 46684210
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| ||||||  |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||  || |    
T  46684096 aaggcttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagttattaacattacgttttggtcccttaagttatcttccg 46684195  T
Q  125 tttgccaaataaatc 139  Q
    |  ||||||||||||    
T  46684196 tcagccaaataaatc 46684210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 31596825 - 31596752
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31596825 aaggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttattaacgttac 31596752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 38758939 - 38758832
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||   ||||||||| ||| |||  || |||| |||    
T  38758939 taattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttatcaacgttataatttggtccc-taagttagtatatgttagcc 38758841  T
Q  131 aaataaatc 139  Q
    |||||||||    
T  38758840 aaataaatc 38758832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 27865135 - 27865048
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaa 113  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||| ||||    
T  27865135 aggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtcctttaa 27865048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 3171488 - 3171573
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||  |||||||||||    
T  3171488 aggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 3171573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 24107489 - 24107405
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccc 109  Q
    ||||| ||||||||||  |||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||  |||||||||    
T  24107489 aaggcttaattaatgatgtggtccattaagttaattgttggttacattttagtcccataagttattaacgttacaatttggtccc 24107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 46685602 - 46685510
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    |||| |||||||||| ||||||| |||| |||||| ||||||||||||||||||||||| |||||| | ||||||| | ||||||||| ||||    
T  46685602 aggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataagttattatcattacgttatagtcccttaagttat 46685510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 19860490 - 19860577
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaa 113  Q
    |||| ||||||||||  |||||  ||||||||||| ||||||||||||| ||||||||| |||||||||||||  |||||||| ||||    
T  19860490 aggcttaattaatgatgtggtctattaagttatttattggttacattttagtcccataagttattaacgttacaatttggtcctttaa 19860577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 54446348 - 54446237
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttaca-ttttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgc 129  Q
    |||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||| |||||||| ||||  |||||||  |||| |||  || |||| ||    
T  54446348 taattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagttattaacattacaatttggtcttttaagttagtatatgttagc 54446249  T
Q  130 caaataaatcct 141  Q
    ||||||||||||    
T  54446248 caaataaatcct 54446237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 38758626 - 38758692
Alignment:
Q  45 gtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||  ||| |||||||    
T  38758626 gtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaatttagtccctt 38758692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 18025884 - 18025937
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataa 84  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  18025884 taattaatgctttggtcccttaagttatttgttggttacattttggtcccataa 18025937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 19860804 - 19860712
Alignment:
Q  48 ctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgccaaataaatcct 141  Q
    ||||||||||||| ||||||||||||||||| || || |||||||| ||||  |||||||| |||| ||| ||||| || ||||||||||||||    
T  19860804 ctttaagttatttattggttacattttggtctca-aagttattaacattacaatttggtcctttaagttaaaatctattagccaaataaatcct 19860712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 14812426 - 14812498
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||| |||| ||||| ||| || |||||||||||| || |||||||||||||||||||| |||||||||||||    
T  14812426 aggcttaatcaatgatttgatcatttaagttattttttagttacattttggtcccataagttattaacgttac 14812498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 18026163 - 18026103
Alignment:
Q  51 taagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  ||| |||||||    
T  18026163 taagttatttgttggttacattttagtcccataagttattaacgttaccatttagtccctt 18026103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 3171823 - 3171711
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttac-gttttggtcccttaacttataatctg 124  Q
    |||| |||||||||| ||||||| ||||||||||||| |||||||||||  ||||    |||||||| |||||   ||||||||||||| |||  |||||    
T  3171823 aggcttaattaatgatttggtcccttaagttatttgtcggttacattttcatccc----attattaatgttacaaatttggtcccttaagttagtatctg 3171728  T
Q  125 tttgccaaataaatcct 141  Q
    || ||||||||||||||    
T  3171727 ttggccaaataaatcct 3171711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 21792233 - 21792300
Alignment:
Q  43 tggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccct 110  Q
    |||||| |||| ||||| |||||||||||||| ||||||||| |||||||||||||  ||||||||||    
T  21792233 tggtcccttaatttattggttggttacattttagtcccataagttattaacgttacaatttggtccct 21792300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 11422383 - 11422428
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttgg 76  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  11422383 taattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 21792430 - 21792373
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtc 107  Q
    ||||||||||||||| ||||||||||||||  ||| |||||||||||||  |||||||    
T  21792430 ttaagttatttgttgtttacattttggtcctctaagttattaacgttacaatttggtc 21792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 54446024 - 54446104
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||  |||||  | ||||||||||||| |||||||||  ||| |||| |||||||||||||  |||||||||||    
T  54446024 taattaatgatgtggtctctaaagttatttgttgattacattttaatcctataagttattaacgttacaatttggtccctt 54446104  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 18024960 - 18024884
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||||    
T  18024960 ttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaacttat 18024884  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 30385196 - 30385272
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    ||||||| |||| |||||| |||||| |||||||||||| ||| |  | || ||| ||||| |||||||||||||||    
T  30385196 ttggtcccttaacttattttttggtttcattttggtcccgtaactattaaaagtttcgtttcggtcccttaacttat 30385272  T

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Target: scaffold0069 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 19899 - 20009
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||| |||  ||||||| |||    
T  19899 taattaatgatttggtcccttaagttatttgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagtatctgttagcc 19998  T
Q  131 aaataaatcct 141  Q
    |||||||||||    
T  19999 aaataaatcct 20009  T

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Target: scaffold0069; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 20230 - 20151
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||  |||||||| ||||||||||||||||| |||||  | |||||| |||||||||||||  |||||||||||    
T  20230 taattaatgatgtggtcctt-aagttatttgttggttatattttaattccataatttattaacgttacaatttggtccctt 20151  T

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Target: scaffold0008 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 266952 - 266844
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||   ||||||||||||| |||  ||||||| |||    
T  266952 taattaatgatttggtcctttaagttatttgttggttacattttggtcacataagttattaaccttataatttggtcccttaagttagtatctgttagcc 266853  T
Q  131 aaataaatc 139  Q
    |||||||||    
T  266852 aaataaatc 266844  T

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Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 266644 - 266705
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    ||||||||||||||||||||||||| |||| |||| ||||||| ||||   |||||||||||    
T  266644 ttaagttatttgttggttacattttagtccgataagttattaatgttataatttggtccctt 266705  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 5367752 - 5367637
Alignment:
Q  25 aaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctg 124  Q
    ||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||| |||  || ||    
T  5367752 aaggcttaattaatgatttggtcctt-aagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatttg 5367654  T
Q  125 tttgccaaataaatcct 141  Q
    || ||||||||||||||    
T  5367653 ttagccaaataaatcct 5367637  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 3659290 - 3659174
Alignment:
Q  24 gaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatct 123  Q
    |||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||  ||||||||||||| |||  || |    
T  3659290 gaaggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagtattt 3659192  T
Q  124 gtttgccaaataaatcct 141  Q
    ||| ||||||||||||||    
T  3659191 gttagccaaataaatcct 3659174  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 8286787 - 8286901
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgt 125  Q
    |||| |||||||||| || |||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| || |||||| ||||  |||||    
T  8286787 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccttaagtaattaacgttacattttagttccttaagttatcttctgt 8286886  T
Q  126 ttgccaaataaatcc 140  Q
       ||||||||||||    
T  8286887 caaccaaataaatcc 8286901  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 3720054 - 3720187
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttgg-ttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgc 129  Q
    |||||||||| ||||||| ||||||||||| ||   ||||||||||||||||||| |||||| | |||||| ||||||||||||||| ||||  ||| ||    
T  3720054 taattaatgatttggtcccttaagttattttttttattacattttggtcccataatttattagcattacgtgttggtcccttaacttttaattcgttagc 3720153  T
Q  130 caaataaatccttttcgttaaattttgtaaaaaa 163  Q
    ||| |||||||| || || || |||||| |||||    
T  3720154 caattaaatcctatttgtgaacttttgtcaaaaa 3720187  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 8287502 - 8287410
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttat 118  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||  ||| |  | |||||||| |||||||||||||| ||||    
T  8287502 aggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcctttaactattcaacgttacattttggtcccttaagttat 8287410  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 3658951 - 3659036
Alignment:
Q  26 aggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtccctt 111  Q
    |||| |||||| |||  |||||| ||||||||||| ||||||||| ||| ||||||||| ||||||| |||||  |||| ||||||    
T  3658951 aggcttaattactgatgtggtcccttaagttatttattggttacagtttagtcccataagttattaaagttacaatttgatccctt 3659036  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 30859910 - 30860010
Alignment:
Q  17 ttaaaaagaaggcataattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaactt 116  Q
    ||||||| ||||| |||||| | | ||||||| |||| |||||| |||||| | |||||||||| ||| |  | || ||| |||||||||||||||||||    
T  30859910 ttaaaaataaggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtcccttaactt 30860009  T
Q  117 a 117  Q
    |    
T  30860010 a 30860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 19048259 - 19048334
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaactta 117  Q
    ||||||| |||| |||||| |||||| |||||||||||| ||| |  | || ||| ||||||||||||||||||||    
T  19048259 ttggtcccttaacttattttttggtttcattttggtcccttaactattaaaagtttcgttttggtcccttaactta 19048334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 29833956 - 29834031
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattatt-aacgttacgttttggtcccttaactta 117  Q
    ||||||| |||| ||| || |||||| |||||||||||| | ||||||| || ||| ||||||||||||||||||||    
T  29833956 ttggtcccttaacttactttttggtttcattttggtccc-ttaattattaaaagtttcgttttggtcccttaactta 29834031  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 29835620 - 29835695
Alignment:
Q  42 ttggtcctttaagttatttgttggttacattttggtcccataaattatt-aacgttacgttttggtcccttaactta 117  Q
    ||||||| |||| ||| || |||||| |||||||||||| | ||||||| || ||| ||||||||||||||||||||    
T  29835620 ttggtcccttaacttactttttggtttcattttggtccc-ttaattattaaaagtttcgttttggtcccttaactta 29835695  T

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Target: scaffold0006 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 93636 - 93743
Alignment:
Q  31 taattaatgaattggtcctttaagttatttgttggttacattttggtcccataaattattaacgttacgttttggtcccttaacttataatctgtttgcc 130  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||||||| |||  || |||| |||    
T  93636 taattaatgatttgatcctt-aagttatttgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagttactatttgttagcc 93734  T
Q  131 aaataaatc 139  Q
    |||||||||    
T  93735 aaataaatc 93743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 93944 - 93896
Alignment:
Q  50 ttaagttatttgttggttacattttggtcccataaattattaacgttac 98  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  93944 ttaatttatttgttggttacattttagtcccataaattattaacgttac 93896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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