View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_73 (Length: 248)
Name: NF5876_low_73
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_73 |
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| [»] scaffold0775 (1 HSPs) |
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Alignment Details
Target: scaffold0775 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0775
Description:
Target: scaffold0775; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2395 - 2634
Alignment:
| Q |
1 |
ttcttcataaagatcatgtagataagctaatattgtttccctcccgtattcattatgtccacataaacaaaatcgacattcctaagacatggaggtatta |
100 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2395 |
ttcttcataaagagcatatagataagctaatattgtttccctcccgtattcattatgtccacataaacaaaatcgacattcctaagacatggaggtatta |
2494 |
T |
|
| Q |
101 |
ccttcggtaccat----aacatactaacaccatttactatgtcattcattgaatttttcattaccatagatttctatgcactcctccaattacaacctcc |
196 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2495 |
ccttcggtaccatctgtaacatactaacaccatttactttgtcattcattgaatttttcattaccatagatttctatgcactcctccaattacaacctcc |
2594 |
T |
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| Q |
197 |
cttttgaacttacttacctgttcaccttctacttgagtat |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2595 |
cttttgaacttacttacctgttcaccttctacttgagtat |
2634 |
T |
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