View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5876_low_76 (Length: 246)

Name: NF5876_low_76
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5876_low_76
NF5876_low_76
[»] chr2 (3 HSPs)
chr2 (84-246)||(15184083-15184245)
chr2 (96-157)||(10057410-10057471)
chr2 (106-157)||(7599124-7599175)
[»] chr7 (4 HSPs)
chr7 (96-157)||(18330660-18330721)
chr7 (96-157)||(28248870-28248931)
chr7 (96-157)||(39727419-39727480)
chr7 (96-159)||(10577736-10577799)
[»] chr6 (1 HSPs)
chr6 (96-157)||(26244132-26244193)
[»] chr4 (2 HSPs)
chr4 (96-157)||(4435106-4435167)
chr4 (106-159)||(24387724-24387777)
[»] chr8 (3 HSPs)
chr8 (108-157)||(9552746-9552795)
chr8 (96-152)||(15727095-15727152)
chr8 (96-157)||(44652432-44652492)
[»] chr5 (1 HSPs)
chr5 (96-157)||(32907001-32907062)
[»] chr1 (2 HSPs)
chr1 (96-157)||(17391522-17391583)
chr1 (96-136)||(46786108-46786148)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 15184245 - 15184083
Alignment:
Q  84 gacaaaacctaaactaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaatttttagtttaataagaaacatcattc 183  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15184245 gacaaaacgtaaactaataaatttaaattattgaaaacgtaaacaaatttataatttaatgcaaagtacaaaatttttagtttaataagaaacatcattc 15184146  T
Q  184 atatttactggcatgcaatataggcttnnnnnnnctttttcgtggtccaacctagtccattta 246  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||    
T  15184145 atatttactggcatgcaagataggcttaaaaaaactttttcgtggtccaacctagtccattta 15184083  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 10057410 - 10057471
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    |||||||| ||||||| |||||||| || |||||||||| | |||||| |||||||||||||    
T  10057410 actaataagtttaaataattgaaaaagttaacaaatttatattttaattcaaagtacaaaat 10057471  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 7599124 - 7599175
Alignment:
Q  106 ttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    |||||||| |||||| || |||||||||| |||||||| |||||||||||||    
T  7599124 ttaaattactgaaaaggttaacaaatttataatttaattcaaagtacaaaat 7599175  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 18330721 - 18330660
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    ||||||||  ||||||||||||||| || |||||||||| | |||||| |||||||||||||    
T  18330721 actaataaccttaaattattgaaaaagttaacaaatttatattttaattcaaagtacaaaat 18330660  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 28248931 - 28248870
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    ||||||||| |||||||| |||||| || |||||||||| | |||||| |||||||||||||    
T  28248931 actaataaacttaaattactgaaaaggttaacaaatttaaattttaattcaaagtacaaaat 28248870  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 39727419 - 39727480
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    ||||||||| ||||||||||||||| || |||||||||  | |||||| |||||||||||||    
T  39727419 actaataaacttaaattattgaaaaagttaacaaatttttattttaattcaaagtacaaaat 39727480  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 10577736 - 10577799
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaattt 159  Q
    |||||||||||||||||||||||||  | |||||||||| || |||||  |||||| |||||||    
T  10577736 actaataaatttaaattattgaaaaaatgaacaaatttataacttaatttaaagtataaaattt 10577799  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 26244193 - 26244132
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    |||||||| |||||||||||||||| || |||||||||| | ||||||  ||||||||||||    
T  26244193 actaataagtttaaattattgaaaaagttaacaaatttatattttaattaaaagtacaaaat 26244132  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 4435167 - 4435106
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    |||||||| |||||||||||||||| || |||||||||| | |||||| ||||||| |||||    
T  4435167 actaataagtttaaattattgaaaaagttaacaaatttatattttaattcaaagtaaaaaat 4435106  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 24387724 - 24387777
Alignment:
Q  106 ttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaattt 159  Q
    ||||||||||||||| |  |||| ||||| |||||||| |||||||||||||||    
T  24387724 ttaaattattgaaaaggctaacacatttataatttaattcaaagtacaaaattt 24387777  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 9552746 - 9552795
Alignment:
Q  108 aaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    |||||||| |||| || |||||||||| |||||||| |||||||||||||    
T  9552746 aaattattaaaaaggttaacaaatttataatttaattcaaagtacaaaat 9552795  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 15727152 - 15727095
Alignment:
Q  96 actaataaatttaaattattg-aaaacgtaaacaaatttacaatttaatgcaaagtac 152  Q
    |||||||| |||||||||||| |||| || |||||||||| |||||||| ||||||||    
T  15727152 actaataagtttaaattattgaaaaatgtgaacaaatttataatttaattcaaagtac 15727095  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 44652492 - 44652432
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    |||||||| |||||||||||||||| || |||||||||  | |||||| |||||||||||||    
T  44652492 actaataagtttaaattattgaaaa-gttaacaaatttttattttaattcaaagtacaaaat 44652432  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 32907001 - 32907062
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    ||||||||| ||||||||||||||| || |||||||||| | |||||| |||| | ||||||    
T  32907001 actaataaacttaaattattgaaaaagttaacaaatttatattttaattcaaaatccaaaat 32907062  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 17391583 - 17391522
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttacaatttaatgcaaagtacaaaat 157  Q
    ||||| || |||||||||||||||| ||  ||||||||| |||||||| ||||||| |||||    
T  17391583 actaacaactttaaattattgaaaaggtttacaaatttaaaatttaattcaaagtataaaat 17391522  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 46786148 - 46786108
Alignment:
Q  96 actaataaatttaaattattgaaaacgtaaacaaatttaca 136  Q
    ||||||||||||||||||||||||| |  ||||||||||||    
T  46786148 actaataaatttaaattattgaaaaagataacaaatttaca 46786108  T

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