View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_77 (Length: 243)
Name: NF5876_low_77
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13287301 - 13287075
Alignment:
| Q |
1 |
caaattctgcaggagaaaattctgacagatgaaatccaagagctgaaccgaaaggtaactcttagcagtgaccttcactaatatttctctctaaaatttt |
100 |
Q |
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| T |
13287301 |
caaattctgcaggagaaaattctgacagatgaaatccaagagctgaaccgaaaggtaactcttaccagtgaccttcactaatatttctctctaaaatttt |
13287202 |
T |
|
| Q |
101 |
gcaaaactcgctgaactttgtgttttaatttctttaaatgcagggaagcataatccatcaagaaaatgtggagctctataagaaggtaaacctccttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13287201 |
gcaaaactcgctgaactttgtgttttaatttcttcaaatgcagggaagcataatccatcaagaaaatgtagagctctataagaaggtaaacctccttcaa |
13287102 |
T |
|
| Q |
201 |
caagaaaacacacaactacacaaaaag |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13287101 |
caagaaaacacacaactacacaaaaag |
13287075 |
T |
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