View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5876_low_8 (Length: 538)
Name: NF5876_low_8
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Complemental strand, 51863669 - 51863151
Alignment:
| Q |
13 |
atcatcaagtatgtcattgatctaatgttgttggaagtggagggggtaaagataaggcagagatggcagttttgcagcttctgaagaaatcaaacttttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51863669 |
atcatcaagtatgtcattgatctaatgttgttggaagtggagggagtaaagataaggcagagatggcagttttgcagcttctgaagaaatcaaacttttt |
51863570 |
T |
|
| Q |
113 |
taaaaaataattgaggaagaggagaattattattaattaaagcgacactaacggccattctacaatcgtctccgaggggggtatcaactttgtccattga |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51863569 |
taaaaaataattgaggaagaggagatttattattaattaaagcgacactaacggccattctacaatcgtctccgaggggggtatcaactttgtccattga |
51863470 |
T |
|
| Q |
213 |
ggttatgaggtcagattcttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattacataccaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51863469 |
ggttatgaggtcagattcttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattacataccaga |
51863370 |
T |
|
| Q |
313 |
tagtgaagtagtgtaggccttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaactatatat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51863369 |
tagtgaagtagtgtaggccttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaactatatat |
51863270 |
T |
|
| Q |
413 |
atacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtgagtatgc |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51863269 |
atacataacaaaccaaggaacctcactttgcaattcagggataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtgagtatgc |
51863170 |
T |
|
| Q |
513 |
atgcttacaagtataatct |
531 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
51863169 |
atgcttacaagtataatct |
51863151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 407 - 480
Target Start/End: Original strand, 43180501 - 43180574
Alignment:
| Q |
407 |
atatatatacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaat |
480 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
43180501 |
atatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaat |
43180574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 13258370 - 13258418
Alignment:
| Q |
115 |
aaaaataattgaggaagaggagaattattattaattaaagcgacactaa |
163 |
Q |
| |
|
||||| ||||| ||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
13258370 |
aaaaaaaattggggaagtggaaaattattattaattaaagtgacactaa |
13258418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 48703195 - 48703134
Alignment:
| Q |
121 |
aattgaggaagaggagaattattattaattaaagcgacactaacggccattctacaatcgtc |
182 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
48703195 |
aattgaggaaaagggaaattattattaattaaagtgacactaataaccattttacaatcgtc |
48703134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University