View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5876_low_82 (Length: 239)
Name: NF5876_low_82
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5876_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 31495227 - 31495426
Alignment:
| Q |
17 |
atttcaccaatttgaacagctgcaaacaattctgcaggacttttgaatgaacacttacatgttaatgcctaatataataattttcattaaatttttaact |
116 |
Q |
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| T |
31495227 |
atttcaccaatttgaacagctgcaaacaattctgcaggacttttgaatgaacacttacatgctaacgcctaatataataattttcattaaatttttaact |
31495326 |
T |
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| Q |
117 |
tttgtagtggtgaaaaatttaacacaagggttaagtgattatgatctgagacaaagaaccattaaatgtagttaggaaacgggatagggactgagttatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31495327 |
tttgtagtggtgaaaaatttaacacaagggttaagtgattatgatctgagacaaagaaccattaaatgtagttaggaaacgggatagggactgagttatt |
31495426 |
T |
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